Pairwise Alignments

Query, 347 a.a., rod shape-determining protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., chaperone protein HscA (RefSeq) from Shewanella loihica PV-4

 Score = 58.2 bits (139), Expect = 6e-13
 Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 54/240 (22%)

Query: 13  LSIDLGTANTLIYVKGQGI---VLDEP------SVVAIRQDKGRGG------------KT 51
           + IDLGT N+L+     G+   + DE       SVV   +D  + G             T
Sbjct: 22  VGIDLGTTNSLVAAVRSGVADTLADESGRHALASVVRYSEDGVQVGVDAERFSAQDPLNT 81

Query: 52  VAAVGHAAKQMLGRTPGNISAIRPMKDGVIA-DFYVTEKMLQHFIRQVHDNSVLKPSPRV 110
           V +V    K+ +GR+  +I A    KD  +  +F  +E  L  F  Q    + ++ S  +
Sbjct: 82  VVSV----KRFMGRSLSDIQA----KDASLPYNFSASENGLPLFNTQAGQFNPIQISADI 133

Query: 111 L-------------------VCVPCGSTQVERRAIRESALGAGAREVYLIDEPMAAAIGA 151
           L                   + VP      +R+  +E+A   G + + L++EP AAAI  
Sbjct: 134 LRPLVDRAEKTLGGSLEGVVITVPAYFDDAQRQGTKEAASLLGVKVLRLLNEPTAAAIAY 193

Query: 152 GLRVSEPTGSMVIDIGGGTTEVAVISLNGVVY-----SSSVRIGGDRFDEAIINYVRRNY 206
           GL   +     + D+GGGT +++++ LN  V+          +GGD FD A+  +++ ++
Sbjct: 194 GLDSGQEGVIAIYDLGGGTFDISILRLNKGVFEVLATGGDSALGGDDFDHALAAHLQESW 253



 Score = 26.2 bits (56), Expect = 0.002
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 120 QVERRAIRESALGAGAREVYLIDEPMAAAIGAGL 153
           QVE   + ES   A A++  L+DE  AA I AG+
Sbjct: 537 QVEAARVLESLSAALAKDGDLLDEAEAATIQAGM 570