Pairwise Alignments

Query, 1252 a.a., MSHA biogenesis protein MshQ from Vibrio cholerae E7946 ATCC 55056

Subject, 900 a.a., MSHA biogenesis protein MshQ (RefSeq) from Shewanella loihica PV-4

 Score =  274 bits (700), Expect = 3e-77
 Identities = 226/786 (28%), Positives = 358/786 (45%), Gaps = 83/786 (10%)

Query: 507  GATPADFLLSLAGSTGASVNNHEIENFKVCALKSRPVGQLIDHFRFTLPQQGLTCSASEV 566
            GA  +   LS  G+ GA V+   +++     +  +  G  +DH+R       L+C+A ++
Sbjct: 154  GAIASGGSLSFGGNGGADVDLGAVDDADFGGMCDKG-GVSVDHYRLEFTSDALSCAAKDI 212

Query: 567  QIKACANDNCSQLYTDPVTATLSPNSAPSATGGWLGGSQVNFNNGIATAQLRRNSVGNVS 626
             ++AC N +CS   +   +  L+ N    A  G+ G +Q          Q+     G+V 
Sbjct: 213  LLRACVNADCSTQASVSSSVELTKNGVKYADVGFTGSAQT---------QVWHPDGGSVL 263

Query: 627  VNVLGSTPASKPFQVNLCSYTNNPNSYSTANCTVNFADSGFIVDVPNAYANQTVTG-TIK 685
            +  LG+T  S P++  +     +    + A C ++FAD+GF  DVP++ A +T     + 
Sbjct: 264  LG-LGTTAPSAPYRCYI-----DGALVANAQCLLDFADTGFYFDVPDSTACKTGNSFNLF 317

Query: 686  AVRKDNASQQCLPSFGNVQKSVAFWSEYLNPTANNSGFQSV--SVGVNGTPIGQSANNAT 743
            AV KD  +QQC P F N  K+++F  +YL P   N+  Q    S+      I        
Sbjct: 318  AVTKDTQTQQCKPLFANQTKTISFGFDYLRPATVNNPAQLTLNSLLSPSDSIAIDGGGTQ 377

Query: 744  SISLNFNQNGEASFPISYREVGSLAL-----HARFTGSGDEQDLLLEGQDSFIRVPRALV 798
            ++ ++FN  G AS   +Y E G + L     H     +G  + L+L   DSF   P    
Sbjct: 378  TMQVHFNGEGVASLSANYPEAGVVTLSAENNHTVSRPAGGSETLVLTHSDSFTSAP---- 433

Query: 799  LSANNPYNPTHPNGQCSAEN---ISCNVFARADENFDLIIRAVVAAPIEDNDFTNNLTAY 855
              A   +     NG+C A +     C V A A E F + + A      +D DF NN    
Sbjct: 434  --AGFHFANVSANGRCDASDPYDADCKVLAAAGEPFSMQVTAACWQSDDDKDFGNNKALQ 491

Query: 856  NYQQQNIALQHTLVQPSAGQSGVLGVNEYTHLLGGTTTIA----QKVSEVGVFDFSLFAP 911
            N++   +++   +VQP  G +GVLG +     L    +      Q  SEVG    +L A 
Sbjct: 492  NFEHGGLSVVSQVVQPDTGVNGVLGSDSLAFSLSSGVSAQIIDDQSWSEVGTMKVALGAD 551

Query: 912  THYLGLDLASANLPIAVTSTGSIGRFIPAYFSVSPMSNVTLDAACKTGNAFSYLGQPFEY 971
              + G+      +P + +S+   GRF PAY  ++         A ++   F+YL QPF +
Sbjct: 552  VSFEGV-----TIPASQSSSEVFGRFTPAYLEITGND----PEAAQSCGPFTYLDQPFGF 602

Query: 972  SNS--PGLYLQPKSANNADTQNYLIDPWWRYN-------NQWNGRTYSDSANGVNLGFDN 1022
                 P + +   +A +  T NY I  WWRY        NQW  R+Y DS     +G  +
Sbjct: 603  KTGTEPNIQVAGLNAQDKVTSNYQIGDWWRYKHRDEADRNQWPERSYQDSTGLAVIG--D 660

Query: 1023 LQTSPISRQALNNSG----IVLNGERVWYQKPLQPKPVFNSAFDLTLNASNLTDQDGVCY 1078
             Q   +S Q +N  G      L G +  Y++   P+  F++ FDL L+A +++D+DG+CY
Sbjct: 661  SQAPALSGQ-VNYRGSPNIAELIGAQPSYRRTQTPQEPFDAKFDLILSALDVSDEDGICY 719

Query: 1079 RQNASSPCLGYTFSHI-DG-AMPLYWGKLVIQDVYGPETQASEQPI---YVEHFTNNGFV 1133
            R +AS+ C G+TFS I DG A  L +G+LV+++ YGP+++    P+   YV   T     
Sbjct: 720  RDSASAACRGFTFSDIGDGKAFELRYGRLVLENGYGPQSEGLRLPLRSEYVSSVTAGVTT 779

Query: 1134 RTI--EDSCTALPAITGFTLQSDPNNNGYTVLTTGV----AVPPQVLAEHSAANLNSGQR 1187
             T+  +D+C+     T         +  Y +L +G     A     L+  S A +N G  
Sbjct: 780  WTLNGDDNCSVFNTQTSLDAGESATSGLYRILPSGFPDLQAYSDSGLSLRSGALVN-GVG 838

Query: 1188 AIRFSAPGAGALGVIDSVLDLNAHNLL---WLAEDKDGDNNFDQTTQGRAQFGLYRGSDR 1244
             + F+ P        +  L L+    L   W       D  FD   +  A FG YRG D+
Sbjct: 839  NLYFAIPNQAG----EVPLKLHVEPWLKGYWNYPGNAADTLFD--PRANAYFGTYRGHDK 892

Query: 1245 VIWWRE 1250
            +I+WRE
Sbjct: 893  IIYWRE 898



 Score = 38.9 bits (89), Expect = 2e-06
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 161 SGATLVLSSGDYWIESLQLNQGGEVVVDGDVRLFIRNNSDWNSAQINVSGSG-NLTIVGY 219
           SG +   + GDY   +        +   G       +N   N+A IN SG+  NL I   
Sbjct: 64  SGHSSRFAPGDYDFATGDFQNKSYMSTTGKTARLYFDNLSMNNASINASGNAENLIIYVR 123

Query: 220 NNITLNQSNQVKAYLYVGGTLTLHNTSVINGRVTS 254
            ++++   N +   LYV GT+T    + I+G + S
Sbjct: 124 GDLSVAGQNYLNGILYVAGTVTFTGNAWIDGAIAS 158