Pairwise Alignments

Query, 1252 a.a., MSHA biogenesis protein MshQ from Vibrio cholerae E7946 ATCC 55056

Subject, 1257 a.a., MSHA biogenesis protein MshQ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  660 bits (1704), Expect = 0.0
 Identities = 469/1312 (35%), Positives = 675/1312 (51%), Gaps = 130/1312 (9%)

Query: 10   VGLGCFALLSAYALAFQD----IDHSIYFPSVVQGHGSCSGAPNPQLIQYNSARINGTNN 65
            +G   F++L+   +        ID    FP  +Q   S     N QL   N + +   +N
Sbjct: 7    IGTQLFSVLAILLMTMMSSHAAIDCGSVFPGPIQSFSS-----NGQLEMQNQSMVVNYDN 61

Query: 66   SVVDFCSINAT-NERPNTRCDNNLCQVSGNTVPSLSLA----------------GINAFK 108
              +D C   A  N   N+ C    C+VSG  +PSL+ A                 + ++ 
Sbjct: 62   --LDVCFKKAKPNGVNNSSCGIGQCKVSG--IPSLAKAIPDILDKTNSSINSNSTVASWT 117

Query: 109  TSSVS-GTEIGWCNSGQSILLSKTNIGTVQLYASCTLSFTGQTEYKIKSLDMGSGATLVL 167
            T SV  G  +G+   G     ++ +IG V++             Y  KS+      T+ L
Sbjct: 118  TPSVELGVTLGY---GAKFDTTRWDIGNVEVNGGSVTVSDAYDAYVFKSVTFYQNGTMTL 174

Query: 168  SSGDYWI--ESLQLNQGG-EVVVDGDVRLFIRNNSDWNSAQINVSGSGNLTIVGYNNITL 224
             +G  +I    L L+ G   ++  G+ + ++R     +   +  + S     VG   + L
Sbjct: 175  RAGKTYIIDGDLNLSLGAINIIGTGNTQFYVRGTFTTSDTSVFNASSTTDIYVG-RELEL 233

Query: 225  NQSNQVKAYLYVGGTLTLHNTSVINGRVTSRRLFMEANTEINQNEQQGYACFTDDFNRSS 284
               ++V+   YV G  TL   S + GR++++ + M +N+++  +      CFTDDF+R+S
Sbjct: 234  QTDSKVQGSFYVAGDATLFTRSTLTGRLSAQNVRMFSNSKVIYDTSPALECFTDDFSRTS 293

Query: 285  LGQNWIPYTSSGNFTPSIISNRMRLTEAITNQATAVTYQRIFPAAGNLVTVEFDYYAWAN 344
            LG +W       +  PSI+SNR+R+T A  NQATA T+QR+FPA  NLVTVEFDYYAW+ 
Sbjct: 294  LGNDWAIKVLGSSTPPSIVSNRLRITPASGNQATASTFQRLFPAENNLVTVEFDYYAWSP 353

Query: 345  LTGNGADGVSVIFSDATVTPRTGGFGGSLGYAQRTDTNPDTPGFAGGWLGVGLDEWGNYS 404
             +G G DGV+VI SDA VTP+ G FGG+LGYAQR D    TPGFAGGWLGVGLDE+GN+S
Sbjct: 354  SSGTGGDGVAVILSDAAVTPQPGSFGGALGYAQRND---GTPGFAGGWLGVGLDEYGNFS 410

Query: 405  NATEGRQGGPG----FRQQAVAIRGSESANYQYLVGTAANLNPKLDVRRTCQWWGCSFSG 460
            N  EG+ G P     FR Q+V +RGS +A+Y YL GTAANLNP++DVR T        S 
Sbjct: 411  NPNEGKVGRPATLPYFRPQSVTLRGSAAASYTYLAGTAANLNPRVDVRST--------ST 462

Query: 461  AGPGHRYFITIDSRSGGGVWVRVDRSV-NGT-MQTVIDWHNVLSNPNQGATPADFLLSLA 518
            A P H+Y I +DS      WV V+R V NG   Q ++   N  + PNQGA P DF LS  
Sbjct: 463  AAPNHKYRIKVDSTIPSQAWVSVERDVRNGQGYQVLVPAFNARAIPNQGAVPEDFYLSFT 522

Query: 519  GSTGASVNNHEIENFKVCALKSRPVGQLIDHFRFTLPQQGLTCSASEVQIKACANDNCSQ 578
            GSTG + NNHEI+NFKVCALKSRPVGQ + HF F      LTC A  + I+ACAN NCSQ
Sbjct: 523  GSTGGANNNHEIDNFKVCALKSRPVGQQVHHFEFDYSSSPLTCKAETMAIRACANANCSQ 582

Query: 579  LYTDPVTATLSPNSAPSATGGWLGGS----QVNFNNGIATAQLRRN-SVGNVSVNVLGST 633
            L+TDPVTA LS N  P+A G W  G      VNF NG+ATA LR N S   V++ V  S 
Sbjct: 583  LFTDPVTAQLSLN--PNANGAWYVGGVNTPSVNFVNGLATASLRYNVSTPPVTIGVSSSI 640

Query: 634  PASKPFQVNLCSYTNNPNSYSTANCTVNFADSGFIVDVPNAYANQTVTGTIKAVRKDNAS 693
            P++      LC   + P   +TA+CT++FA+SGFI DVP+  AN+  +  I AVRK N+S
Sbjct: 641  PSTIAGSNTLCRKGSGP--LNTASCTLSFAESGFIFDVPDKLANKPTSINISAVRKSNSS 698

Query: 694  QQCLPSFGNVQKSVAFWSEYLNPTANNSGFQ---SVSVGVNG--TPIGQSANNATSISLN 748
             +C+P+FGN  K+V FWS Y++P++  S  Q   ++   V G  T IG++    T I L 
Sbjct: 699  LECVPAFGNATKNVGFWSTYVSPSSIPSALQQAITIKGNVTGAITAIGKTQALRTQIPLR 758

Query: 749  FNQNGEASFPISYREVGSLALHARFTGSGDEQDLLLEGQDSFIRVPRALVLSANNPYNPT 808
            F  NG AS  I+Y + G + L AR  G+G++  L++ G D F+ VP  L + A       
Sbjct: 759  FT-NGVASLEINYPDAGRVQLDARLDGTGEDTGLVMTGSDQFVSVPAGLCVKA------A 811

Query: 809  HPNGQCSAENISCNVFARADENFDLIIRAVVAAPIEDNDF-TNNLTAYNYQQQNIALQHT 867
              +  C + ++SCN + +A +NF + ++A+      D DF + NL+  N+    + L   
Sbjct: 812  DASAYCPSADMSCNAYRKAGQNFGMTLQAMAWEKDGDTDFCSGNLSTPNFIDAQMKLASD 871

Query: 868  LVQPS---AGQSGVLGVNEYTHL--LGGTTTIA-QKVSEVGVFDFSLFAPTHYLGLDLAS 921
            +V PS    G  GVLG+  Y+H        TI+ Q +S+VGVF  +  A  +YLG   +S
Sbjct: 872  VVAPSIANGGHDGVLGMTSYSHTAQTNNLNTISNQSISDVGVFQIAAQATPNYLG-TASS 930

Query: 922  ANLPIAVTSTGSIGRFIPAYFSVSPMSNVTLDAACKTGNAFSYLGQPFEYSNSPGLYLQP 981
             N+PI  ++  +IGRF+P  F V    ++++  AC     FSY+ QPF  S S    ++ 
Sbjct: 931  LNIPIGYSA--NIGRFVPDRFLV---GDISVLPAC---GGFSYMAQPFPMSMS----IKA 978

Query: 982  KSANNADTQNYLIDPWWRYNNQWNGRTYSDSANGVNLGFDNLQTSPISRQALNNSGIVLN 1041
             +   A TQNY   P+   + +  G    ++ NGV+L    L   P++  + N     ++
Sbjct: 979  LNIGGAVTQNY-FPPFSHASAKLVG---ENNNNGVDLQ-SRLSALPVNAASWNQGVATVD 1033

Query: 1042 GERVWYQKPLQPKPVFNSAFDLTLNASNLTDQDGVCYRQNASSPCLGYTF---SHIDGAM 1098
            G        + P    N   D      ++    GV    N   P   Y++   + +D A 
Sbjct: 1034 GSYRANVSRMTPNIAANQYQDGPFELLDI----GVQLMDNDPRPNGLYSYVALADMDAAS 1089

Query: 1099 P---------------LYWGKLVIQDVYGPETQASEQPIYVEHFTNNGFVRTIEDSCTAL 1143
                            L  G++V+ + YGPET+  + P   E++    +V   +DSCT  
Sbjct: 1090 TGTCTNCNARKITTQILRHGRVVMDNTYGPETEILKMPTRAEYWNGTNWVLNGDDSCTI- 1148

Query: 1144 PAITGFTLQSDPNNNGYTVLTTGVAVPPQVLAEHSAANLNSGQRAIRFSA-PGAGAL--G 1200
             A  G   Q D    GY      +A    +    ++    +GQ  + + A   +G L  G
Sbjct: 1149 -ATYGLGSQVDNAGLGYN-FDPDLAAGQSINRTGASLAFQAGQFDLLWRAVTSSGNLYRG 1206

Query: 1201 VIDSVLDLNAHNLLWLAEDKDGDNNFDQTTQGRAQFGLYRGSDRVIWWRESN 1252
             + + LD+    L W         +     +    FG YRG DR+I+WRE N
Sbjct: 1207 QVTAPLDVPTW-LEWYWNWNGVTPSSLSDPRASGFFGRYRGHDRIIYWREVN 1257