Pairwise Alignments

Query, 1252 a.a., MSHA biogenesis protein MshQ from Vibrio cholerae E7946 ATCC 55056

Subject, 1248 a.a., MSHA biogenesis protein MshQ (RefSeq) from Shewanella sp. ANA-3

 Score =  636 bits (1641), Expect = 0.0
 Identities = 444/1263 (35%), Positives = 650/1263 (51%), Gaps = 118/1263 (9%)

Query: 53   IQYNSARI-NGTNNSVVDFCSINATNERPNTRCDNNLCQVSGNT---------VPSLSLA 102
            I +NS+ + N  NN+++ +  +   N          LC  S N+         + SL   
Sbjct: 41   ITFNSSYLYNAPNNALIWYSYLPTYNFIQKGNSLATLCVTSNNSYRWCQDGDYIASLPSN 100

Query: 103  GINAFKTSSVSGTEIG---WCNSGQSILLSKTNIGTVQLYASCTLSFTGQTE-YKIKSLD 158
             I+  + +S     IG   W N   +++  + N   +   +  T+ F      YK+KSL 
Sbjct: 101  RIDFSQCTSSGTVNIGPPTWDNKQINVIEGEYNNIVLDGGSDKTIRFVSNNGVYKMKSLK 160

Query: 159  MGSGATLVLSSGDYWIESLQLNQGGEVVVD--GDVRLFIRNNSDWNSAQINVSGSGN-LT 215
              SG  + L++G YWIE+L +N G  +V    G V  FI+NN  +    +N  G      
Sbjct: 161  ATSGR-IELAAGQYWIETLSINDGVTLVFPSTGTVSFFIKNN--YRHYNLNTIGQAEKFL 217

Query: 216  IVGYNNITLNQSNQVKAYLYVGGTLTLHNTSVINGRVTSRRLFMEANTEI---------- 265
            I  Y+N TLN    +K+Y+   G   L  +S + G +T+R + +  N+ I          
Sbjct: 218  IYSYSNFTLNGEASLKSYVVAEGNAVLDGSSYLEGAITARNISLGGNSSIKFDDNAAKID 277

Query: 266  ---NQNEQQGYACFTDDFNRSSLGQNWIPYTSSGNFTPSIISNRMRLTEAITNQATAVTY 322
               N N      CF D+F+ S+L  +W+   SSG FTP+I+S RMRLTEA +NQ+TA TY
Sbjct: 278  VVPNCNPAPVLQCFNDNFSLSALSNDWVVSRSSGTFTPAIVSGRMRLTEAKSNQSTASTY 337

Query: 323  QRIFPAAGNLVTVEFDYYAWANLTGNGADGVSVIFSDATVTPRTGGFGGSLGYAQRTDTN 382
            QR+FPAA NLV ++FD+YA+    GNGADG++++ SDA +TP+ G FGG LGY  +    
Sbjct: 338  QRLFPAANNLVEIQFDHYAYG---GNGADGIALVLSDAAITPQPGAFGGPLGYGYK---- 390

Query: 383  PDTPGFAGGWLGVGLDEWGNYSNATEGRQGGPGFRQQAVAIRGSES--ANYQYLVGTAAN 440
            P   GFAGGWLG+G+DE+GN+S    GR    G R+Q+V +RGS +  + Y YL GT  +
Sbjct: 391  PGISGFAGGWLGIGIDEFGNFSGEG-GRVNLSGQRRQSVVVRGSGAGTSGYNYLRGTCND 449

Query: 441  LNPKLDVRRTCQWWGCSFSGAGPGHRYFITIDSRSGGGVWVRVDRSVNGTMQTVIDWHNV 500
               K +    C       +   P HRY ITIDS+  G   V+V+R+      T+I   + 
Sbjct: 450  --GKSNTSGNCLSPTVDGNNVSPAHRYKITIDSQVSGKSIVKVERNTGSGFVTLIPAFDA 507

Query: 501  LSNPNQGATPADFLLSLAGSTGASVNNHEIENFKVCALKSRPVGQLIDHFRFTLPQQGLT 560
            +    Q A P DFLLSL GSTG S NNHEI+N ++CALKS P+G  IDHF F    QGLT
Sbjct: 508  IDEQGQAAIPTDFLLSLTGSTGGSNNNHEIDNVQICALKSNPIGAQIDHFEFDHTGQGLT 567

Query: 561  CSASEVQIKACANDNCSQLYTDPVTATLSPNSAPSATGGWLGGSQVNFNNGIATAQLRRN 620
            C+   V I+ACAN +CSQL+TDP+ ATL P SA  + G W+GG QV+F+NG    QLRRN
Sbjct: 568  CNPETVTIRACANASCSQLFTDPLAATLLPESA--SEGIWIGGKQVSFSNGSTQLQLRRN 625

Query: 621  SVGNVSVNVLGSTPASKPFQVNLCSYTNNPNSYSTANCTVNFADSGFIVDVPNAYANQTV 680
            + G V++ V GS+P +KP    LC   N     S  NC++ FADSGF+ DVP+  AN+ V
Sbjct: 626  TPGVVTLGVKGSSPTTKPLSKTLCRIGN--GGMSENNCSLTFADSGFVFDVPDKLANKPV 683

Query: 681  TGTIKAVRKDNASQQCLPSFGNVQKSVAFWSEYLNPTANNSGFQSVSVGVNGTPIGQSAN 740
               +KAV+K + ++QC+PSF +  K + FWS+Y+ P+A        +V VN T I  ++ 
Sbjct: 684  EVLVKAVKKSDVTKQCVPSFQDQTKILNFWSQYVEPSA---PITPKAVTVNNTAISTASA 740

Query: 741  NATSISLNFNQNGEASFPISYREVGSLALHARFTGSGDEQDLLLEGQDSFIRVPRALVLS 800
              T +SL F+ NG+A   ++Y + G L L A++ GSG+EQ L++ G D F+ VP  L + 
Sbjct: 741  TPTVLSLGFDVNGQAKVSVNYPDAGKLQLDAQYIGSGNEQGLVMTGSDQFVSVPAGLCV- 799

Query: 801  ANNPYNPTHPNGQCSAENISCNVFARADENFDLIIRAVVAAPIEDNDF-TNNLTAYNYQQ 859
                  P   +  CS+ ++SCN + +A +NF + ++A+      D DF + N++  N+  
Sbjct: 800  -----KPVDASASCSSADMSCNAYRKAGQNFGMTVQAMAWEKDGDTDFCSGNVSTPNFSD 854

Query: 860  QNIALQHTLVQP---SAGQSGVLGVNEYTHLLGG---TTTIAQKVSEVGVFDFSLFAPTH 913
            Q + L   +V P   S G  G LGV  Y+H +      +   Q +SEVGVF  +  A  +
Sbjct: 855  QAMTLTSKVVAPNMASGGHDGALGVASYSHTIQANNLNSITNQTISEVGVFQIAAQASPN 914

Query: 914  YLGLDLASANLPIAVTSTGSIGRFIPAYFSVSPMSNVTLDAACKTGNAFSYLGQPFEYSN 973
            YLG   A+++L I +  + +IGRF+P  F V    ++++  AC    +FSY+ QPF  S 
Sbjct: 915  YLG---AASSLNIPIGYSANIGRFVPDRFLV---GDISVLPAC---GSFSYMDQPFPMSM 965

Query: 974  SPGLYLQPKSANNADTQNYLIDPWWRYNNQWNGRTYSDSANGVNLGFDNLQTSPISRQAL 1033
            S    L   +   A TQNY   P+     +  G    ++ NG++L    L   P++  + 
Sbjct: 966  S----LTALNIGGAVTQNY-FPPFSLATAKLVG---ENNNNGIDLQ-SRLSALPVNAASW 1016

Query: 1034 NNSGIVLNGERVWYQKPLQPKPVFN----SAFDLTLNASNLTDQDGVCYRQN-----ASS 1084
                  ++G        + P    N      F+L      L D D    R N      +S
Sbjct: 1017 VQGVATVDGAYRANLSRVTPNVATNLYQDGPFELLDIGVQLMDNDP---RPNGLFSYVAS 1073

Query: 1085 P---------CLGYTFSHIDGAMPLYWGKLVIQDVYGPETQASEQPIYVEHFTNNGFVRT 1135
            P         C       I   + L  G++V+ + YGPET+    P   E+     +V  
Sbjct: 1074 PDMDAATTGNCTNCNAKKITTQI-LRHGRVVMDNTYGPETEILRMPTRAEYSNGANWVLN 1132

Query: 1136 IEDSCTALPAITGFTLQSDPNNNGYTV---LTTGVAVPPQVLAEHSAANLNSGQRAIRFS 1192
             +DSCT   A  G   Q D    GY     LTTG ++        +++   +GQ  + + 
Sbjct: 1133 GDDSCTI--ATYGLASQVDNAALGYNFDPDLTTGQSIN----RSGASSAFQAGQFDLLWR 1186

Query: 1193 A-PGAGAL--GVIDSVLDLNAHNLLWLAEDKDGDNNFDQTTQGRAQFGLYRGSDRVIWWR 1249
            A   +G L  G + + LD+    L W               +  A FG YRG DR+I+WR
Sbjct: 1187 ALTSSGNLYRGQVTAPLDVPTW-LEWYWNWNGVSPTSLSDPRASAFFGRYRGHDRIIYWR 1245

Query: 1250 ESN 1252
            E N
Sbjct: 1246 EVN 1248