Pairwise Alignments

Query, 256 a.a., type II secretion system protein from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., MSHA biogenesis protein MshO precursor (RefSeq) from Shewanella amazonensis SB2B

 Score = 87.4 bits (215), Expect = 3e-22
 Identities = 72/280 (25%), Positives = 133/280 (47%), Gaps = 32/280 (11%)

Query: 2   SRGFTLIEMVITIILLGIVGLFLGNIAGQAMGIYVDTTAREALIQQGRFLTERMSRELRE 61
           +RGFTL+E+V  I++LG++ + + +       I+++++A E +  + R+  ER++R++R 
Sbjct: 10  ARGFTLVELVTVILVLGVLAVGVSSFIIFGTRIFIESSAVEQVTGESRYAIERLTRDIRR 69

Query: 62  AVPNSVIVANG--------CIEFLPIVNSAIYQSL---PTNTVNTLRLL--PITKSIQAG 108
           A+P S+ +  G        C+E +PI  S  Y +L   P       R++       I AG
Sbjct: 70  ALPGSLRLVAGSDGSDSWQCLEMVPIAASTSYVTLAISPDAAAQQARVIRDGANTGIIAG 129

Query: 109 ERLVISPNDPAALRAALLPAAGQIAEVASTVDFTPPQDRTMVNVPLVQGTLFTLQSPANR 168
           +   + P     +        G+   V S ++     + +  + P+     F+  SP+ R
Sbjct: 130 QMAHVYPLMATDVYPPPTGDTGKRFAVKSVIEGADSLELSF-DTPV----RFSQGSPSRR 184

Query: 169 AYFYTTPVAYCY------QGNSIYRYAGYSLNRTALSP-----AYLGNGVLMAQSL-SGA 216
            YF    V+YC+         S++R+ GY L  +A+ P        G   LMA ++ + A
Sbjct: 185 IYFSQDVVSYCFIEQLASHNISLWRFNGYGL--SAIQPDVPVMRAAGRSALMANAVTTPA 242

Query: 217 NFSVLAPQLQRNGLVKIELTFADKGEQVRFDHDALVYNTP 256
             ++LA  L  N +V++++ FA  GE  ++ H     N P
Sbjct: 243 PIALLASTLINNAMVQLDVGFAVNGETFQYQHQVHTANVP 282