Pairwise Alignments

Query, 256 a.a., type II secretion system protein from Vibrio cholerae E7946 ATCC 55056

Subject, 265 a.a., methylation site containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  114 bits (286), Expect = 2e-30
 Identities = 85/270 (31%), Positives = 133/270 (49%), Gaps = 25/270 (9%)

Query: 2   SRGFTLIEMVITIILLGIVGLFLGNIAGQAMGIYVDTTAREALIQQGRFLTERMSRELRE 61
           ++GFTL+EMV  II+LGI+ + + +       I+V++++ + ++ Q RF+ ERM+RELR 
Sbjct: 6   NKGFTLVEMVTVIIILGILVVGVSSFVILGTRIFVESSSVDQVLSQSRFVIERMTRELRN 65

Query: 62  AVPNSVIVANG----CIEFLPIVNSAIYQSLP----TNTVNTLRLLPITKSIQAGERLVI 113
           A+PNS+ VA+     CIEF+PI  SA Y SLP    + T +   +LP  + I    ++VI
Sbjct: 66  ALPNSIRVASSSDAQCIEFMPITASASYISLPIAPDSATDSGSVMLP-AQGINLAHKMVI 124

Query: 114 SPNDPAAL-RAALLPAAGQIAEVASTVDFTPPQDRTMVNVPLVQGTLFTLQSPANRAYFY 172
            P  PA L + +     G+I +V         +  +   +       F   SP  R +  
Sbjct: 125 YPLSPAQLYQDSPSTTQGRIFDV---------KQLSGNQIEFNNALRFDEASPQKRYFIV 175

Query: 173 TTPVAYCY-QGNSIYRYAGYSLNRTALSPAYLGNGVLMAQSL-----SGANFSVLAPQLQ 226
              V+YC+     I RY GY +  T  +PA +G G LM Q +     S          L 
Sbjct: 176 NGAVSYCFLSRGDIRRYDGYGVQTTQPTPAQMGTGALMGQHVVNNLGSEEPIHYTPGTLV 235

Query: 227 RNGLVKIELTFADKGEQVRFDHDALVYNTP 256
            N +V++   F   G+  ++ H   V N P
Sbjct: 236 NNAVVQLSPRFEVNGQTFQYQHQVQVINVP 265