Pairwise Alignments

Query, 256 a.a., type II secretion system protein from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., prepilin-type N-terminal cleavage/methylation domain-containing protein from Dechlorosoma suillum PS

 Score = 68.9 bits (167), Expect = 1e-16
 Identities = 79/278 (28%), Positives = 116/278 (41%), Gaps = 36/278 (12%)

Query: 3   RGFTLIEMVITIILLGIVGLFLGNIAGQAMGIYVDTTAREALIQQGRFLTERMSRELREA 62
           RGFTLIE ++ ++LLGI G  +G      +  Y DT  R  L         RM+R+LR A
Sbjct: 9   RGFTLIEAIVAMVLLGIAGSLVGMFIRIPIEGYFDTERRARLTDTADTALRRMARDLRLA 68

Query: 63  VPNSV-IVANGCIEFLPIVNSAI---YQSLPTNT------------VNTLRLLPITKSIQ 106
           +PNS+ I A G + +L  + + +   Y++ PT               N   +L      Q
Sbjct: 69  LPNSIRITAVGNVRYLEFLQTRVGGRYRTDPTAAGGGNPLEFGIADTNGFDVLGTPPVFQ 128

Query: 107 AGERLVISPNDPAALRAALLPAAGQIAEVASTVDFTPPQDRTMVNVPLVQGTLFTLQSPA 166
           AG+ + I         A L   +G  A+  +  +  P    T   V       F + SP 
Sbjct: 129 AGDHVAI---------ANLGTDSG--ADAYTGNNMVPITGITPAGVVQFAAFRFPVPSPG 177

Query: 167 NRAYFYTTPVAY-CY-QGNSIYRYAGYSLNRTALSPAYLGNG-VLMAQSLSG-ANFSVLA 222
            R +     V Y C      + RY+GY+L   A+ P   G   VL+A  ++  AN   + 
Sbjct: 178 ARFFIVNQRVTYECNPDAGLLRRYSGYAL-VGAVQPTPPGVAPVLLADRVANRANACTMT 236

Query: 223 PQLQ----RNGLVKIELTFADKGEQVRFDHDALVYNTP 256
                   R G+V + LT  + GE V   H   V N P
Sbjct: 237 YDANVANTRMGVVSMSLTLEEAGESVTLLHQVHVSNVP 274