Pairwise Alignments

Query, 256 a.a., type II secretion system protein from Vibrio cholerae E7946 ATCC 55056

Subject, 261 a.a., protein containing prepilin-type cleavage/methylation, N-terminal domains from Marinobacter adhaerens HP15

 Score =  102 bits (254), Expect = 8e-27
 Identities = 81/273 (29%), Positives = 125/273 (45%), Gaps = 35/273 (12%)

Query: 3   RGFTLIEMVITIILLGIVGLFLGNIAGQAMGIYVDTTAREALIQQGRFLTERMSRELREA 62
           RGFTL+E+VI I+LL IV          +    +D ++R+     G  ++E++SRE+REA
Sbjct: 5   RGFTLVELVIVIVLLAIVATISVRFVSLSTQGALDVSSRQQRSLAGVVISEQISREVREA 64

Query: 63  VPNSVIV--ANGCIEFLPIVNSAIYQSLPTNT-VNTLRLLPITKSIQAGERLVI------ 113
           +P S+    +  C+E++PI+ ++ Y  LP     ++ + +P+     A  R+V+      
Sbjct: 65  LPTSIRTNASGNCLEWMPILAASNYLDLPRGANPDSFQAVPLPGGASASGRVVVYGYGSD 124

Query: 114 --SPNDPAALRAALLPAAGQIAEVASTVDFTPPQDRTMVNVPLVQGTL--FTLQSPANRA 169
             SP  P           G I+  A     T P   + V V    G    F+ QSP  R 
Sbjct: 125 VYSPGSP-----------GPISPPA-----TMPSGASPVTVTFDSGATHRFSAQSPERRF 168

Query: 170 YFYTTPVAYCYQGNSIYRYAGYSLNRTALS--PAYLGNGVLMAQSL--SGANFSVLAPQL 225
           Y    PV+ C  G  +YRY  Y +N +  S  P+   +  +MA +L  +  NF V  P L
Sbjct: 169 YIVGEPVSVCQVGVYLYRYRNYGINASPASGLPSSYPDREVMAATLANNSLNFQVTPPSL 228

Query: 226 QRNGLVKIELTFA--DKGEQVRFDHDALVYNTP 256
           QR  +V      A  D GE      +  + N P
Sbjct: 229 QRGAVVSFGFVLADPDSGETTDISQEVQIRNVP 261