Pairwise Alignments

Query, 256 a.a., type II secretion system protein from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., MSHA biogenesis protein MshO (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  119 bits (299), Expect = 5e-32
 Identities = 87/279 (31%), Positives = 137/279 (49%), Gaps = 33/279 (11%)

Query: 2   SRGFTLIEMVITIILLGIVGLFLGNIAGQAMGIYVDTTAREALIQQGRFLTERMSRELRE 61
           SRGFTL+EMV  I++LGI+ + + +       I+V++++ + ++ Q RF  ER++RELR 
Sbjct: 13  SRGFTLVEMVTAILILGILVVGVSSFIIFGTRIFVESSSVDQVLSQSRFAIERITRELRS 72

Query: 62  AVPNSVIVANG------CIEFLPIVNSAIYQSLP-----TNTVNTLRLLPITKSIQAGER 110
           A+PNSV + NG      C+EF+PI  S  Y ++P          T+ L  +   I   + 
Sbjct: 73  ALPNSVRL-NGNNLTYQCVEFVPIEASTTYLAMPIAPGAAALTGTVILDNVASDIAVNQY 131

Query: 111 LVISPNDPAALRAALLPAAGQIAEVASTVDFTPPQDRTMVNVPLVQGTLFTLQSPANRAY 170
             I P   + +  +      QI  +++  +         VN+       F   SP  R Y
Sbjct: 132 AWIYPLTDSDVYNSARQKRAQINSISTAAN--------QVNLTFTASARFAEASPRQRIY 183

Query: 171 FYTTPVAYCYQ----GNSIY--RYAGYSLNRTALSPAYLGNGVLMAQSLSGANFS----- 219
           F + PV+YC++     N +   RY GY L  +   PA +G+GVLMAQ ++ A  S     
Sbjct: 184 FASAPVSYCFEKAPSSNELILTRYTGYGLTASQPVPADMGSGVLMAQGIANALTSSADLP 243

Query: 220 -VLAP-QLQRNGLVKIELTFADKGEQVRFDHDALVYNTP 256
            +L P  L  N +V ++  F   GE  ++ H   V N P
Sbjct: 244 LILTPSSLVNNAMVHLQPRFNVNGETFQYRHQVQVINVP 282