Pairwise Alignments

Query, 256 a.a., type II secretion system protein from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., methylation site containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  128 bits (321), Expect = 1e-34
 Identities = 94/281 (33%), Positives = 145/281 (51%), Gaps = 32/281 (11%)

Query: 2   SRGFTLIEMVITIILLGIVGLFLGNIAGQAMGIYVDTTAREALIQQGRFLTERMSRELRE 61
           SRGFTL+EMV  I++LGI+ + + +       I+V++++ + ++ Q RF  ERM+RELR 
Sbjct: 13  SRGFTLVEMVTVILILGILVVGVSSFIFFGTRIFVESSSVDQVLSQSRFAIERMTRELRS 72

Query: 62  AVPNSV-IVANG----CIEFLPIVNSAIYQSLP--------TNTVNTLRLLPITKSIQAG 108
           AVPNSV +  NG    C+EF+PI  S  Y ++P        T TV    +L  T +I+  
Sbjct: 73  AVPNSVRLNGNGLTYQCVEFVPIEASTTYLAMPIVPSAAALTGTV----ILNATDNIKDN 128

Query: 109 ERLVISPNDPAALRAALLPAAGQIAEVASTVDFTPPQDRTMVNVPLVQGTLFTLQSPANR 168
           + + I P     +  +      QI       +  PP     V +  +  T F   SP  R
Sbjct: 129 QYIWIYPLTDNDVYNSARQKRAQIKTFTPLGE--PPNPANQVTLTFMASTRFAEASPRQR 186

Query: 169 AYFYTTPVAYCYQGNS------IYRYAGYSLNRTALSPAYLGNGVLMAQSLSGA-NFS-- 219
            YF ++PV+YC++ +S      + RY GY LN +  +P+ +  GVLMAQ+++ A N S  
Sbjct: 187 IYFGSSPVSYCFEKSSSSNELILKRYTGYGLNVSQPTPSSMSAGVLMAQNVANALNDSAD 246

Query: 220 ---VLAP-QLQRNGLVKIELTFADKGEQVRFDHDALVYNTP 256
              +L P  L  N +V ++  F   GE  ++ H   V N P
Sbjct: 247 LPLILTPSSLVNNAMVHLQPRFNVNGETFQYRHQVQVINVP 287