Pairwise Alignments

Query, 203 a.a., MSHA pilin protein MshD from Vibrio cholerae E7946 ATCC 55056

Subject, 188 a.a., MSHA pilin protein MshD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 92.0 bits (227), Expect = 6e-24
 Identities = 57/184 (30%), Positives = 100/184 (54%), Gaps = 21/184 (11%)

Query: 21  IAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLDEVLGRA 80
           I ++GFTL+E+++ ++V+ +A+V +++ L+P++ ++A+ +  VK+AEL  +V++EV G+ 
Sbjct: 25  IRQQGFTLIELVVGMLVIAIAIVMLSSMLFPQADRAAKTLHRVKSAELAHSVMNEVWGKR 84

Query: 81  FDQHSGPNGGLPECVITETAGRTLCSAPSA-LGKDTGESNNTEFNDVDDYITSSPIPVTD 139
           +DQ++  NGG+P C      G  L S+ SA LG + GE  N +FNDVDDY   S      
Sbjct: 85  YDQNTNANGGVPAC------GSPLGSSCSATLGPEAGEGRN-DFNDVDDYHGLSQNDAML 137

Query: 140 VLGTDISSEYQRFSVSIQVFYVSDNGGQFSATPATERTHYKRIALVIYDPQGNAYPFAAI 199
                 +  Y  + +S+ V Y         A P T     K + + +  P      +  +
Sbjct: 138 NSSQTYAEAYPNYQLSVTVTY--------GAAPNT-----KLVTINVTTPDNEVITYNLV 184

Query: 200 KGNY 203
           + NY
Sbjct: 185 RSNY 188