Pairwise Alignments

Query, 162 a.a., MSHA pilin protein MshC from Vibrio cholerae E7946 ATCC 55056

Subject, 157 a.a., MSHA pilin protein MshC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 84.0 bits (206), Expect = 1e-21
 Identities = 56/156 (35%), Positives = 79/156 (50%), Gaps = 6/156 (3%)

Query: 7   GFTLIELVVVIILLGILSAYAASRFLGPSSFAVVTTQSEILASLRLTQSRAMQRTGYCNR 66
           GFTL+ELV  IIL+GILS     R    SS++  + ++E +A LR  Q +A+  T  C R
Sbjct: 6   GFTLVELVTTIILIGILSVTVLPRLFSQSSYSAFSLRNEFMAELRQVQQKALNNTDRCFR 65

Query: 67  WLLTSNAAIQVSPQAMQGSCLSVFPSNPTDPSWVDAAVSGVALSLAGSGGASF-LDFDSL 125
            +  S    QVS  A + S      +   +P +  A   G  L L G+   SF LDFD  
Sbjct: 66  -VAVSTTGYQVSQFASRNSAGCTGAALAPNPLYTQAFQGGAQLVLTGNSANSFNLDFDIN 124

Query: 126 GRATQCISAGCTVSISSSTHNEVRQVCINTEGYIYA 161
           GR +   +  C   I+    N+   + I++EGYIYA
Sbjct: 125 GRPSLACNGSCIKVIA----NDTLVINISSEGYIYA 156