Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., General secretion pathway protein F from Pseudomonas fluorescens FW300-N2E2

 Score =  182 bits (462), Expect = 2e-50
 Identities = 110/400 (27%), Positives = 209/400 (52%), Gaps = 7/400 (1%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           M  + ++  +A G   SG +EA ++  A  +L ++G+    +     E++    N   L 
Sbjct: 1   MNRYRFEAADAQGKIESGHLEADSQGAAFNLLRSRGLTALQVQ---VERNTTPANGGGLF 57

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
           +  +    L    RQ+ SL  A +PL  ++    +    K +   L +V  ++ +G  L+
Sbjct: 58  SAKLSDNDLAWATRQLASLLGASLPLEAALSATVEQAERKHIAQTLSAVRADVRSGMRLA 117

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFV-I 179
            ++   P  F  ++ ++I  GE +G L Q + +LA Y E+    R +I TA  YP  V +
Sbjct: 118 EALAARPRDFPEIYRALIAAGEESGDLAQVMERLADYIEERNNLRGKILTAFIYPGVVGL 177

Query: 180 TFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWG-LLLGIIVGLLF 238
             + + +F+L+  V+PQ  S FS+   DLP  T  ++T SDF +  WG L  G++ G  +
Sbjct: 178 VSIAIVIFLLSY-VVPQVVSAFSQARQDLPALTVAMLTASDF-IRAWGWLCFGVLAGGFW 235

Query: 239 AFRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAE 298
           ++R ++     R+ W    LR+P++G  V     +RFA T +++  AGVPL ++L  + +
Sbjct: 236 SWRMYLRKPAARLSWHARVLRLPLIGRFVLGLNTARFASTLAILGGAGVPLLRALEAARQ 295

Query: 299 AIDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSD 358
            + N  L Q + E  +++  GV ++A      +F P++I +++ GE+TG +  +L   + 
Sbjct: 296 TLSNDRLSQSVSEATAKVREGVNLAAALRVEKVFPPVLIHLIASGEKTGCLPPMLERAAQ 355

Query: 359 FYDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPM 398
              R+++     +TA +EP+++V +  +VLV+ + + LP+
Sbjct: 356 TLSRDIERRAMGMTALLEPLMIVVMGGVVLVIVMAVLLPI 395