Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., Type IV fimbrial assembly protein PilC from Pseudomonas fluorescens FW300-N2E2

 Score =  212 bits (539), Expect = 2e-59
 Identities = 122/403 (30%), Positives = 226/403 (56%), Gaps = 9/403 (2%)

Query: 4   FYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTPS 63
           + ++G++  G+K SG +   +  L    L  +GI P    Q   +KS   F+    + P 
Sbjct: 11  YTWEGKDRKGTKMSGELTGQSPALVKAQLRKQGINP----QKVRKKSTSIFSKGKRIKP- 65

Query: 64  VPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASM 123
             L++  +F RQM ++ KAGVPLL++   + +   N  ++  +D V  E+  G + +A++
Sbjct: 66  --LDI-ALFTRQMATMLKAGVPLLQAFDIIGEGFDNPSMRKLVDEVKQEVAAGNSFAAAL 122

Query: 124 QLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVL 183
           +  P  F  L+ +++  GE  G LD  L ++A Y E+    + +IK AM YP  V+    
Sbjct: 123 RKCPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKSEALKAKIKKAMTYPAAVVLVAA 182

Query: 184 LAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAFRAW 243
           +   IL VKV+PQF S+FS FG  LP  T ++I  S+    +W ++LG ++G  F  +  
Sbjct: 183 VVTGILLVKVVPQFESVFSGFGAQLPAFTVMVIGLSEIMQQWWWVMLGGLMGAFFGVKYA 242

Query: 244 VNTTNGRIRW-DHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDN 302
           +  +     W D   L++P++G ++ ++ ++R+ART S   +AGVPL ++L   + A  N
Sbjct: 243 LRRSERFRDWRDKWLLKLPLIGTLLYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGN 302

Query: 303 KFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDR 362
              +  +  +K ++ +G+ ++ +   + IF  L +QM ++GEE+G +D++L +V+ FY+ 
Sbjct: 303 VVFKHAVQRIKQEVSTGMQLNFSMRASGIFPNLAVQMTAIGEESGALDDMLDKVASFYEA 362

Query: 363 EVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDAL 405
           EVD  +  LT+ +EP ++V +  +V  L + ++LP++ +  A+
Sbjct: 363 EVDNLVDNLTSLMEPFIMVVLGVVVGGLVVAMYLPIFQLGSAI 405