Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., General secretion pathway protein F from Pseudomonas fluorescens FW300-N2E2

 Score =  185 bits (469), Expect = 2e-51
 Identities = 108/398 (27%), Positives = 205/398 (51%), Gaps = 4/398 (1%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           M TF Y+  +A G +  G VEA +   A ++L  +G++P  +      ++   ++    L
Sbjct: 1   MPTFDYRAEDAQGRRCKGRVEADSPRHARQLLRERGLLPCELLAAKEPRTLGGWHAGTWL 60

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
           +P+     L +   Q+ +L +AG+PL  S+  +AQ    +++   L +V + +  G  L+
Sbjct: 61  SPAD----LALLTLQLSTLIQAGLPLEESLGAVAQQSQKRRVAHLLAAVRSRVMEGHALA 116

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180
            +++  P  F  LF + +  GE +G L + L QLA Y +    +R+RI+ A+ YP  ++ 
Sbjct: 117 TALRAFPQAFPELFCATVAAGEQSGHLGRVLEQLATYTQARQASRQRIQLALVYPLILML 176

Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAF 240
             +  +  L   V+P    +F   G  LP  T+ LI  SD    Y  LLLG + GLL  +
Sbjct: 177 ACVAIVAFLLGYVVPDVVKIFVDSGQPLPWLTQALIAMSDGLRRYGLLLLGALAGLLGLW 236

Query: 241 RAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAI 300
           R  +     R+RW  L LR+P++G+++   + +RFA T +++  + VPL ++L ++A+ I
Sbjct: 237 RWSLRQPAWRLRWHRLLLRLPLLGEVLRAMEAARFASTLAILSKSAVPLVEALHIAAQVI 296

Query: 301 DNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFY 360
            N  +  R+ ++   +  G  ++          PL++ M++ GE  G +D +L   ++  
Sbjct: 297 GNLTIRARMADVARSVREGGTLTRGLELGGDIPPLMLHMIASGERAGELDSMLARAAEQQ 356

Query: 361 DREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPM 398
           +  +   +  + +  EP +LV +  +VL++ + I LP+
Sbjct: 357 EASLAARIALVVSLFEPAMLVLMGGVVLLIVMAILLPI 394