Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., general secretion pathway protein F from Pseudomonas stutzeri RCH2

 Score =  200 bits (508), Expect = 7e-56
 Identities = 117/403 (29%), Positives = 217/403 (53%), Gaps = 12/403 (2%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAE----KSAFDFNW 56
           MA F Y   +  G +  GL+EA +   A ++L  K   P  + Q  ++    +  F F  
Sbjct: 1   MAAFEYLALDPRGREQKGLIEADSPRQARQLLREKQWAPLEVKQAKSKEDVSRGGFSFG- 59

Query: 57  KALLTPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNG 116
                  +    L +  RQ+ +L +A +P+  ++R  A    + ++K+ L +V   +  G
Sbjct: 60  -----RGLSARDLALVTRQLATLVQAALPIEEALRAAAAQSTSAKIKSMLLAVRARVMEG 114

Query: 117 RNLSASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPT 176
            +L+A+++ +P+ F  L+ + +  GE+ G L   L QLA Y +Q  ++R++I+ A+ YP 
Sbjct: 115 HSLAAALREYPSAFPELYRATVAAGEHAGHLGLVLDQLADYTDQRQQSRQKIQLALLYPV 174

Query: 177 FVITFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNY-WGLLLGIIVG 235
            ++   L  + +L   V+P    +F   G +LP  TR LI TSD   N+ W ++LGII G
Sbjct: 175 ILMVASLAIVVLLLGYVVPDVVKVFVNTGQELPALTRGLIATSDVVKNWGWLIVLGIIAG 234

Query: 236 LLFAFRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLAL 295
           +L A RA +     R+RW    LR+P++G +      +RFA T +++  +GVPL ++L++
Sbjct: 235 VL-AMRAALRDPALRLRWHAFILRIPLIGRLSRATNTARFASTLAILTKSGVPLVEALSI 293

Query: 296 SAEAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLE 355
           +A  I N  + +R++E   ++  G +++        F P+++ M++ GE++G +D++L  
Sbjct: 294 AAAVIANLRIRERVVEAAQKVREGSSLTRALDATGEFPPMMLHMIASGEKSGELDQMLAR 353

Query: 356 VSDFYDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPM 398
            +   + ++   +  L    EP +LVF+ A+VLV+ L I +P+
Sbjct: 354 TARNQENDLAAQVSLLVGLFEPFMLVFMGAVVLVIVLAILMPI 396