Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., Type II secretory pathway, component PulF from Pseudomonas stutzeri RCH2

 Score =  214 bits (546), Expect = 3e-60
 Identities = 121/399 (30%), Positives = 221/399 (55%), Gaps = 9/399 (2%)

Query: 2   ATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLT 61
           + F ++G N  G+K  G +   +  L    L  +G+ P    Q   +KS   F     + 
Sbjct: 9   SVFTWEGTNRQGAKIKGELSGVSPALVKAQLRKQGVNP----QKVRKKSVSLFGAGKKIK 64

Query: 62  PSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSA 121
           P      + +F RQM ++ KAGVPLL+S   + +   N  ++  +D +  E+  G + + 
Sbjct: 65  PMD----IALFTRQMATMMKAGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFAT 120

Query: 122 SMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITF 181
           +++  P  F  L+ +++  GE +G L+  L ++A Y E+    + +IK AM YP  V+  
Sbjct: 121 ALRKKPQYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKTEALKAKIKKAMNYPIAVVLV 180

Query: 182 VLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAFR 241
            ++   IL +KV+PQF  +F+ FG +LP  T ++I  S+    +W ++L ++ G+ +AF+
Sbjct: 181 AIIVSAILLIKVVPQFQDVFANFGAELPAFTLMVIGLSEALQAWWHVVLFVMFGVAYAFK 240

Query: 242 -AWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAI 300
            A   +   R  +D   LR+P+VGDI+ ++ ++RFART +   +AGVPL  +L   A A 
Sbjct: 241 TAHGKSERFRNGFDRFLLRIPVVGDILYKSAVARFARTLATTFAAGVPLVDALDSVAGAT 300

Query: 301 DNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFY 360
            N       +++KS + SG+ ++ +      F  + +QM ++GEE+G +DE+L +V+ FY
Sbjct: 301 GNVVFRNATMKVKSDVSSGMQLNFSMRTTGTFPTMAVQMTAIGEESGALDEMLGKVATFY 360

Query: 361 DREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMW 399
           + EVD  +  LT+ +EP+++  +  +V  L + ++LP++
Sbjct: 361 EDEVDNMVDGLTSLMEPMIMAVLGVLVGGLIIAMYLPIF 399