Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., type II secretion system protein from Pseudomonas syringae pv. syringae B728a

 Score =  218 bits (554), Expect = 3e-61
 Identities = 123/397 (30%), Positives = 225/397 (56%), Gaps = 9/397 (2%)

Query: 4   FYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTPS 63
           + ++G +  G+K SG +      L    L  +GI PT + + +   S F    K      
Sbjct: 11  YTWEGVDKKGTKTSGELSGHNLALVKAQLRKQGINPTKVRKKSV--SIFGKGKKIK---- 64

Query: 64  VPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASM 123
            PL++   F RQM ++ KAGVPLL+S   +++   N  ++A + S+  E++ G + + ++
Sbjct: 65  -PLDI-AFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATAL 122

Query: 124 QLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVL 183
           +  P  F  LF +++  GE  G L+  L ++A Y E+  + + +IK AM YP  V+   L
Sbjct: 123 RQKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVAL 182

Query: 184 LAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAF-RA 242
           +   IL +KV+PQF S+F+ FG  LP  T ++I  SD    +W  ++G+     F F RA
Sbjct: 183 IVSGILLIKVVPQFQSVFASFGAQLPTFTLMVIGLSDVVQKWWLAIVGLFFVSFFIFKRA 242

Query: 243 WVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDN 302
           +  +   R   D L L++PI+G ++ ++ ++R+ART +   +AGVPL ++L   A A  N
Sbjct: 243 YKQSQKFRDSLDRLLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGN 302

Query: 303 KFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDR 362
              +  ++++K  + +G+ ++ +  +  +F  L IQM ++GEE+G +D +L +V+ +Y+ 
Sbjct: 303 VVFKNAVIKVKQDVSTGMQLNFSMRSTGVFPSLAIQMTAIGEESGALDTMLDKVATYYED 362

Query: 363 EVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMW 399
           EVD  +  LT+ +EP+++ F+  +V  L + ++LP++
Sbjct: 363 EVDNMVDNLTSLMEPMIMAFLGVIVGGLVIAMYLPIF 399