Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 410 a.a., fimbrial assembly protein PilC-like from Synechococcus elongatus PCC 7942

 Score =  229 bits (584), Expect = 1e-64
 Identities = 129/411 (31%), Positives = 227/411 (55%), Gaps = 5/411 (1%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEK--SAFDFNWKA 58
           M T+  Q R++ G+     ++A     A   L  +G +  SI + A         FN + 
Sbjct: 1   MPTYVAQVRDSRGALRKQRIQAGNVREARVGLRQQGFLVQSIDESAGLSLGGLSSFNLEE 60

Query: 59  LLTPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRN 118
             T  V ++ + +F RQ+ SL  AGVP++R++  L +   N +L+  L  +  ++  G N
Sbjct: 61  A-TSKVTVKDMALFSRQLSSLVDAGVPIVRALGLLTEQTRNPKLRKTLKQINIDVQEGLN 119

Query: 119 LSASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFV 178
           LS SM+  P +F  L+V+MIQ GE  G LD  L +L+   E     R ++K+AM YP  V
Sbjct: 120 LSDSMRKFPKVFDGLYVAMIQAGETGGVLDDVLNRLSKLLEDMSRLRNQMKSAMTYPMAV 179

Query: 179 ITFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVN--YWGLLLGIIVGL 236
               +L    + + +IP F  +F   G +LP  T +L++ S       +WG  L  + G 
Sbjct: 180 FVIAILVFLGMTIFIIPTFAGIFEDQGAELPGFTLLLLSISQLLRTPIFWGFFLIFLFGS 239

Query: 237 LFAFRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALS 296
           +F F+ + +T  GR+  D+L LR+P++G+++ +A  +RF RTF  +  AGVP+  +L + 
Sbjct: 240 IFVFKQYYSTPPGRLSVDNLVLRLPVLGEMIQKAATARFCRTFGSLTRAGVPIMTALEIV 299

Query: 297 AEAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEV 356
            +   N+ + + I   + ++++G  +S       +F  + + M+++GEETG +D ++ +V
Sbjct: 300 RDTAGNQAIARSIDAARMEVQTGGMMSVALSRYRVFPLMALSMITIGEETGELDTMVNKV 359

Query: 357 SDFYDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDALKG 407
           +DFY+ EV+  +K LT+ +EPI++V V  +V  + L ++LPM+ + D +KG
Sbjct: 360 ADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGSILLAMYLPMFSIFDQIKG 410