Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., MSHA biogenesis protein MshG (RefSeq) from Shewanella amazonensis SB2B

 Score =  420 bits (1080), Expect = e-122
 Identities = 202/407 (49%), Positives = 295/407 (72%), Gaps = 2/407 (0%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           M  + Y+GRNA G + +G ++AA+E  AA+ LL++ ++P    +          +  +L 
Sbjct: 1   MPVYKYRGRNAQGQQVTGELDAASENAAADQLLSRAVIPLEFRETKPRGEGVSVS--SLF 58

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
              V LE L IF RQM+SLT++G+P+LR++ GL++  H++Q+K ALD +  +LT GR LS
Sbjct: 59  RRRVSLEELQIFTRQMYSLTRSGIPILRAIAGLSETTHSQQMKQALDDISVQLTAGRPLS 118

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180
           ++M  HP +F  LFVSM+ VGENTG+L+   LQL+GY E+E ETR+RIK+A+RYPTFV+ 
Sbjct: 119 SAMNHHPEVFDALFVSMVHVGENTGKLEDVFLQLSGYLEREQETRRRIKSAVRYPTFVLI 178

Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAF 240
            + LAM ILN+ VIP+F  MFSRFG +LP  TRILI TS+FFVNYW LL  ++VGL+   
Sbjct: 179 AISLAMVILNIMVIPKFADMFSRFGAELPWATRILIATSNFFVNYWWLLALLVVGLIGGL 238

Query: 241 RAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAI 300
             W  T  G  +WD  +L MP VG I+ R+ LSR+ R+F++M+ AGVP+ Q+L+L A+A+
Sbjct: 239 AYWHKTEQGEKKWDQWKLHMPAVGSIIERSTLSRYCRSFAMMMGAGVPMTQALSLVADAV 298

Query: 301 DNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFY 360
           DN ++  +I+ M+  IESG ++   + ++ +FTPLV+QM++VGEETG++++LL + +DFY
Sbjct: 299 DNAYMHDKIVAMRRGIESGESMLRVSNHSKLFTPLVLQMVAVGEETGQLEQLLNDAADFY 358

Query: 361 DREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDALKG 407
           + EVDYDLK LTA++EPIL+  VA +VL+LALGI+LPMW M++ +KG
Sbjct: 359 EGEVDYDLKNLTAKLEPILIGIVAGIVLILALGIYLPMWDMLNVVKG 405