Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., type IV pilus biogenesis protein PilC (RefSeq) from Shewanella amazonensis SB2B

 Score =  214 bits (544), Expect = 5e-60
 Identities = 125/407 (30%), Positives = 231/407 (56%), Gaps = 24/407 (5%)

Query: 4   FYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQ------GAAEK--SAFDFN 55
           F ++G N DG K+SG +  A+      +L N+GI P  + +      GA+ K  +A D  
Sbjct: 23  FEWKGLNRDGKKSSGELRGASVAEIKTLLKNQGINPKVVRKKSDGLFGASNKKINAMDI- 81

Query: 56  WKALLTPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTN 115
             A++T            RQ+ ++  AGVPL+ ++  L +     +++  L ++ N++  
Sbjct: 82  --AMVT------------RQIATMLMAGVPLVTTIEILGKGHEKPKMRELLGTILNDIQA 127

Query: 116 GRNLSASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYP 175
           G  LS +++ H   F  L+V ++  GE++G LD    ++A Y E+    + +IK AM YP
Sbjct: 128 GIPLSDALRPHRIYFDDLYVDLVAAGEHSGSLDTVFDRIATYREKAEALKSKIKKAMFYP 187

Query: 176 TFVITFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVG 235
             V+   +    +L + V+PQF  +F+ FG +LP  T+++I  S F  + W   L  IVG
Sbjct: 188 AAVVVVAIAVTTLLLLFVVPQFEEIFTSFGAELPAFTQLIINISRFLQSSWYFFLTAIVG 247

Query: 236 LLFAF-RAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLA 294
            ++ + RA  N+   R R D   L++P++G+I+++A ++RFART +   +AGVPL   L 
Sbjct: 248 SIWLYVRAHRNSQAVRDRQDEFVLKIPVIGEILHKAAMARFARTLATTFAAGVPLIDGLE 307

Query: 295 LSAEAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLL 354
            +A A  N    + +L +++++ +G+ ++      N+F  ++IQM+ +GEE+G +D +L 
Sbjct: 308 SAAGASGNAVYRKALLRIRTEVMAGMQMNVAMRTVNLFPDMLIQMVMIGEESGSLDNMLN 367

Query: 355 EVSDFYDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGM 401
           ++++ Y+ +VD  +  L++ IEPI++V +  +V  L +G++LP++ M
Sbjct: 368 KIANIYEMQVDDAVDGLSSLIEPIMMVVIGTLVGGLIVGMYLPIFQM 414