Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., general secretion pathway protein F (RefSeq) from Shewanella amazonensis SB2B

 Score =  192 bits (488), Expect = 2e-53
 Identities = 103/407 (25%), Positives = 212/407 (52%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           M  F Y+  +  G +  G++EA +   A   L +  ++P  I     +++       +  
Sbjct: 1   MPAFEYKALDGKGKQQKGVIEADSARHARSQLRDMRLMPLEIEPVVEKETKAKSVGFSPF 60

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
              + +  L +  RQ+ +L  +G+P+  +++ + Q C   +L + + +V + +  G +L+
Sbjct: 61  KRGISVAELALITRQIATLVASGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLA 120

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180
            SM   P IF  L+ SM+  GE +G L+  L +LA Y E+  + + ++  AM YP  +  
Sbjct: 121 DSMAEFPHIFDDLYRSMVASGEKSGHLEVVLNRLADYTERRQQLKSKLTQAMIYPVMLTL 180

Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAF 240
             +  + +L   V+P+  S F   G +LP  T+ L+ +S F  +Y  L++ ++V     F
Sbjct: 181 VAIGVVAVLLAAVVPKVVSQFEHLGQELPATTKALMASSAFVQDYGLLIMVLVVVAFVVF 240

Query: 241 RAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAI 300
           +  +   N ++++    LR+P+VG +      +RFART S++ ++ VPL   + ++ E +
Sbjct: 241 QRLLANDNFKMKYHQFLLRLPVVGRVSRSINTARFARTLSILSASAVPLLDGMRIAGEVM 300

Query: 301 DNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFY 360
            N  + + + E  +++  G ++ A   N  +F P+++ M++ GE++G+++ +L   +D  
Sbjct: 301 QNLRVREAVEEATARVREGTSLGAALTNTKLFPPMMLYMIASGEKSGQLENMLERAADNQ 360

Query: 361 DREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDALKG 407
           DRE + ++       +P L++ +AA+VL + L I  P+  M + + G
Sbjct: 361 DREFEANVNLALGVFQPALVISMAAVVLFIVLAILQPILEMNNLIGG 407