Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., type II secretion system inner membrane protein GspF from Rahnella sp. WP5

 Score =  199 bits (507), Expect = 9e-56
 Identities = 108/398 (27%), Positives = 208/398 (52%), Gaps = 1/398 (0%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           M+ F +      G    G+++A +  LA +++  +G+    I Q     +  +   K L 
Sbjct: 1   MSRFAFHAITPTGKTQRGVIDADSLRLARQIVRERGLTLLEIKQVGNSLTTLNSKNKGLK 60

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
           T  VP   + +F RQ+ +LT A +P+  ++  +A+   +  L   L +V N++  G  L+
Sbjct: 61  T-RVPSHAISLFSRQLATLTNAALPVEAALAVIARQTEHAGLTQVLTAVRNKVVEGHTLA 119

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180
            ++   P +F P+F +++  GE TG+L   L ++A YYE   + + ++  AM YP  +  
Sbjct: 120 DALSDFPRLFDPMFRTLVTAGERTGQLGTVLEKMADYYEIRQQIKSKLSQAMIYPAMLTI 179

Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAF 240
             +L + IL V V+PQ    F      LP+ TRILI  S F    W ++  +++  +  F
Sbjct: 180 IAILVIVILLVAVVPQIIEQFVHMKHTLPISTRILIGVSGFLERTWWVIAIVVIAFIATF 239

Query: 241 RAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAI 300
           R  +   +  +R+    L + ++G ++     +R+ART S++ S+GVPL  ++ +S E I
Sbjct: 240 RLALRRKHNLMRFHTALLGVVVLGPLIRAINSARYARTLSILQSSGVPLLDAMKISTEGI 299

Query: 301 DNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFY 360
            N+ +   + +    +  G ++ A      +F P+++ M++ GE++GR+ EL+   +D  
Sbjct: 300 TNRRIHYLLTQAAEHVRQGSSLFAVLEQTRLFPPMMLYMIASGEQSGRLGELMAHAADNQ 359

Query: 361 DREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPM 398
           D+ + + L  + A  EP+L+V +A++VL + + I  P+
Sbjct: 360 DKLMQHRLSMVLALFEPLLIVTMASIVLFIIMSILQPI 397