Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., type II secretion system F family protein from Pseudomonas sp. BP01

 Score =  183 bits (465), Expect = 7e-51
 Identities = 118/397 (29%), Positives = 205/397 (51%), Gaps = 9/397 (2%)

Query: 4   FYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTPS 63
           + + G +A+G+  SG     +       L+ +GI   S+       S   F+       +
Sbjct: 8   YRWHGTDANGTPVSGQTRGRSPAYVRAGLIRQGITVASLRPA----SGLGFSLPKRRVKA 63

Query: 64  VPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSASM 123
            P      F RQ+ +L KAGVPLL++   + ++  +    A LD +  ++ +G  L+ ++
Sbjct: 64  DPAG----FSRQLATLLKAGVPLLQAFEVMGRSGCDAAQAALLDRLKQDVASGLGLADAL 119

Query: 124 QLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFVL 183
           Q HP  F  L+ ++++VGE +G LD+ L QLAG  EQ     K+++ AM YP  ++   L
Sbjct: 120 QRHPVWFDALYCNLVRVGEQSGTLDRQLEQLAGMLEQRRALHKKVRKAMVYPLLLLLTGL 179

Query: 184 LAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAFRAW 243
               IL ++VIP+F SMFS  G  LP  T+ +I  S     +  LLL + V L FA R  
Sbjct: 180 GVSAILLLEVIPKFESMFSGMGAALPAFTQWVIDLSTGLSRFAPLLLVMGVVLGFAVRQL 239

Query: 244 VNTTNGRIRWDHLR-LRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAIDN 302
                    W   R L +P+ G ++  A L+RFAR+ +    AGVPL  +L   A     
Sbjct: 240 YRQHAPARLWISRRVLGLPVFGKLLREAALARFARSLATSYGAGVPLLDALGTVARVTGG 299

Query: 303 KFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYDR 362
           +  EQ +L ++  + +G  ++       +F PL++Q+ ++GE +G +D++L + +  Y+ 
Sbjct: 300 ELHEQAVLRLRQGMANGQGLNQAMAGELLFPPLLVQLTAIGESSGTLDQMLEKAASHYEE 359

Query: 363 EVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMW 399
           +V   L  LT+ +EP +++ +  +V  L + ++LP++
Sbjct: 360 QVSQALDQLTSLLEPAIVLILGLLVGGLVVAMYLPIF 396