Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., type II secretion system F family protein from Pseudomonas sp. BP01

 Score =  186 bits (471), Expect = 1e-51
 Identities = 116/406 (28%), Positives = 207/406 (50%), Gaps = 8/406 (1%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           M  + Y   +++G K  G V+A  + LAA  L  +G++  S+  G+    A   + +++L
Sbjct: 1   MPVYAYSALDSEGRKQRGEVQATDQALAARQLHQRGLLVLSLKPGSRLLRAG--SQRSVL 58

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
            P+     L+ F +Q+ +L  AG PL +++  L +N      KA L+ V  ++  G+ LS
Sbjct: 59  KPAE----LISFTQQLTTLISAGQPLDKALATLLKNLRKPAAKALLERVRGQVKAGQPLS 114

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180
            +++ HPA F+P + S+++ GE  G L+  L QLA Y E+    R  +  A+ YP F++ 
Sbjct: 115 LALEEHPATFTPFYTSLVRAGEAGGVLEITLAQLASYLERSHTLRAEVLNALIYPAFLVI 174

Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLL-LGIIVGLLFA 239
            V+ ++ +L   V+PQF  +F   GV +P  TR ++   D  VN WGL+ LG +      
Sbjct: 175 GVIGSLGLLLAYVVPQFVPIFQDLGVPIPWVTRAILALGD-VVNAWGLVSLGTLSATFCL 233

Query: 240 FRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEA 299
             A       RI  D    R  ++G ++ + + +R ART   +LS  V L  +L++  + 
Sbjct: 234 LLATRRNPQRRIAQDRWLWRSRLLGPLLQKLETARLARTLGTLLSNSVTLLAALSIGRDV 293

Query: 300 IDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDF 359
             N+ L + + ++   +  G ++        +   L +QM+ VGE++  +  +LL+V+D 
Sbjct: 294 SANQALREHVGQVGEAVRQGGSLPHALAADPLLPDLALQMIEVGEQSASLGAMLLKVADV 353

Query: 360 YDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDAL 405
           YD E    +  L A + P L + +A +V  + L I LP+  +   +
Sbjct: 354 YDIESKRTIDRLLAALVPTLTIVMAVLVAAIMLAIMLPLMSLTSTI 399