Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., general secretion pathway protein F (RefSeq) from Shewanella loihica PV-4

 Score =  210 bits (535), Expect = 5e-59
 Identities = 115/410 (28%), Positives = 223/410 (54%), Gaps = 7/410 (1%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVP---TSIAQGAAEKSAFDFNWK 57
           M  F Y+  NA G +  G+VEA T   A   L    ++P   T + +  A+  +  F++K
Sbjct: 1   MPAFEYKALNAQGKQQKGVVEADTARHARGQLRELRLMPLEITPVVEKEAKAKSGGFSFK 60

Query: 58  ALLTPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGR 117
                 + +  L +  RQ+ +L  AG+P+  +++ + Q C   +L + + +V + +  G 
Sbjct: 61  R----GISVAELALITRQIATLVAAGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGY 116

Query: 118 NLSASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTF 177
           +L+ SM   P IF  L+ +M+  GE +G L+  L +LA Y E+  + + ++  AM YP  
Sbjct: 117 SLADSMAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKTKMTQAMIYPIV 176

Query: 178 VITFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLL 237
           +    +  + IL   V+PQ    F   G +LP  T+ LI +SDF  +Y  +++G+I+ L+
Sbjct: 177 LTLVAISVIAILLAAVVPQVVGQFEHMGQELPWTTQFLIASSDFVRDYGLIVIGVIIALV 236

Query: 238 FAFRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSA 297
              +  + +   R+++D   L+MP+VG +      +RFART S++ ++ VPL  ++ +++
Sbjct: 237 VGAKQLLRSAANRMKYDSAILKMPVVGRVSKGLNTARFARTLSILTASSVPLLDAMRIAS 296

Query: 298 EAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVS 357
           E + N  +   + E  +++  G ++ A   N  +F P+++ M++ GE++G+++++L   +
Sbjct: 297 EVLMNVRVRAAVEEATARVREGTSLGAALANTKLFPPMMLYMITSGEKSGQLEQMLERAA 356

Query: 358 DFYDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDALKG 407
           D  DRE + ++       EP+L+V +AA+VL + L I  P+  + + + G
Sbjct: 357 DNQDREFESNVNIALGVFEPMLVVSMAAVVLFIVLAILQPILELNNMISG 406