Pairwise Alignments
Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056
Subject, 405 a.a., type II secretion system protein (RefSeq) from Shewanella loihica PV-4
Score = 427 bits (1098), Expect = e-124 Identities = 206/407 (50%), Positives = 300/407 (73%), Gaps = 3/407 (0%) Query: 1 MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60 M + Y+GR+A G+ SG ++A T+ AA+ LL++ ++P + + K A +F+ +L Sbjct: 1 MPIYQYKGRDAQGNAVSGRLDATTQSAAADQLLSRAVIPLELVEA---KVAREFHLGSLF 57 Query: 61 TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120 V L+ L IF RQM+SLT++G+P+LR++ GL+++ H+K++K AL+ + +L +GR LS Sbjct: 58 KSKVGLDELQIFTRQMYSLTRSGIPILRAIAGLSESSHSKRMKDALNDISEQLISGRPLS 117 Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180 ++M HP +F LFVSMI VGENTG+L+ A +QL+GY E+E ETR+RIK AMRYP FV+ Sbjct: 118 SAMNHHPDVFDALFVSMIHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLM 177 Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAF 240 V LAM +LN+ VIP+F +F+RFG DLP T++LI TS+FFVNYW LLL +VG Sbjct: 178 AVALAMVVLNIMVIPKFADLFARFGADLPWATKLLIGTSNFFVNYWYLLLIALVGCFVGI 237 Query: 241 RAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAI 300 R W NT G +WD +L++P VG I+ R+ LSR+ R+FS+MLSAGVP+ Q+L+L A+A+ Sbjct: 238 RYWHNTEKGEQQWDRWKLKIPAVGSIIERSTLSRYCRSFSMMLSAGVPMTQALSLVADAV 297 Query: 301 DNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFY 360 DN ++ RI+ M+ IESG ++ + + +FTPLV+QM++VGEETG+ID+LL + +DFY Sbjct: 298 DNAYMHDRIVAMRRGIESGESMLRVSNQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFY 357 Query: 361 DREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDALKG 407 + EVDYDLK LTA++EPIL+ VA +VL+LALGI+LPMW M++ +KG Sbjct: 358 EGEVDYDLKNLTAKLEPILIGIVAVIVLILALGIYLPMWDMLNVVKG 404