Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., type II secretion system protein (RefSeq) from Shewanella loihica PV-4

 Score =  427 bits (1098), Expect = e-124
 Identities = 206/407 (50%), Positives = 300/407 (73%), Gaps = 3/407 (0%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           M  + Y+GR+A G+  SG ++A T+  AA+ LL++ ++P  + +    K A +F+  +L 
Sbjct: 1   MPIYQYKGRDAQGNAVSGRLDATTQSAAADQLLSRAVIPLELVEA---KVAREFHLGSLF 57

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
              V L+ L IF RQM+SLT++G+P+LR++ GL+++ H+K++K AL+ +  +L +GR LS
Sbjct: 58  KSKVGLDELQIFTRQMYSLTRSGIPILRAIAGLSESSHSKRMKDALNDISEQLISGRPLS 117

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180
           ++M  HP +F  LFVSMI VGENTG+L+ A +QL+GY E+E ETR+RIK AMRYP FV+ 
Sbjct: 118 SAMNHHPDVFDALFVSMIHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLM 177

Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAF 240
            V LAM +LN+ VIP+F  +F+RFG DLP  T++LI TS+FFVNYW LLL  +VG     
Sbjct: 178 AVALAMVVLNIMVIPKFADLFARFGADLPWATKLLIGTSNFFVNYWYLLLIALVGCFVGI 237

Query: 241 RAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAI 300
           R W NT  G  +WD  +L++P VG I+ R+ LSR+ R+FS+MLSAGVP+ Q+L+L A+A+
Sbjct: 238 RYWHNTEKGEQQWDRWKLKIPAVGSIIERSTLSRYCRSFSMMLSAGVPMTQALSLVADAV 297

Query: 301 DNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFY 360
           DN ++  RI+ M+  IESG ++   +  + +FTPLV+QM++VGEETG+ID+LL + +DFY
Sbjct: 298 DNAYMHDRIVAMRRGIESGESMLRVSNQSQLFTPLVLQMVAVGEETGQIDQLLNDAADFY 357

Query: 361 DREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDALKG 407
           + EVDYDLK LTA++EPIL+  VA +VL+LALGI+LPMW M++ +KG
Sbjct: 358 EGEVDYDLKNLTAKLEPILIGIVAVIVLILALGIYLPMWDMLNVVKG 404