Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., type IV pilus biogenesis protein PilC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  207 bits (528), Expect = 4e-58
 Identities = 124/406 (30%), Positives = 226/406 (55%), Gaps = 8/406 (1%)

Query: 3   TFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALLTP 62
           TF ++G N DG K SG +  A+       L ++G+ P ++ +    +SA  F    L  P
Sbjct: 25  TFEWKGVNRDGQKTSGELRGASAAEIRSQLKSQGVNPKTVRK----QSAALFK---LGDP 77

Query: 63  SVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLSAS 122
            +    + +  RQ+ ++  AGVPL+ ++  L +     +++  L ++ +E+ +G  LS +
Sbjct: 78  KITPMDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKVKMRELLATILSEIQSGIPLSDA 137

Query: 123 MQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVITFV 182
           ++ H   F  L+V ++  GE++G LD    ++A Y E+    + +IK AM YP  V+   
Sbjct: 138 LRPHRRYFDDLYVDLVAAGEHSGSLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVA 197

Query: 183 LLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAF-R 241
           +L   +L + V+PQF  +F  FG +LP  T++++  S    + W + LG IV  +F F R
Sbjct: 198 ILVTALLLLFVVPQFEDIFKGFGAELPAFTQLVLQISRGLQSSWYIFLGAIVAGVFLFVR 257

Query: 242 AWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAID 301
           A  N+   R R D   L++P +G I+++  ++RFART +   +AGVPL   L  +A A  
Sbjct: 258 AHRNSQIVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASG 317

Query: 302 NKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFYD 361
           N    + IL+++ ++ +G+ ++       +F  ++IQM+ +GEE+G +D +L +VS  Y+
Sbjct: 318 NAVYRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVSTIYE 377

Query: 362 REVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDALKG 407
            +VD  +  L++ IEPI++V +  +V  L + ++LP++ M   + G
Sbjct: 378 MQVDDAVDGLSSLIEPIMMVVIGTVVGGLIVAMYLPIFQMGKVVGG 423