Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., general secretion pathway protein F (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  202 bits (515), Expect = 1e-56
 Identities = 109/408 (26%), Positives = 220/408 (53%), Gaps = 2/408 (0%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           M  F Y+  +A G +  G++EA T   A   L ++ ++P  I     +++    +  AL 
Sbjct: 1   MPAFEYKALDAKGKQLKGVIEADTARHARSQLRDQRLMPLDILPVTEKEAKAKSSGFALF 60

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
              + +  L +  RQ+ +L  AG+P+  S++ + Q C   +L + + +V + +  G +L+
Sbjct: 61  KRGISVAELALITRQIATLVAAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSLA 120

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180
            S+   P IF  L+ +M+  GE +G L+  L +LA Y E+  + + +++ AM YP  +  
Sbjct: 121 DSLAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIMLTL 180

Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVG-LLFA 239
             +  + +L   V+P+    F   G +LP  TR LI  SDF  NY GLL+ +++G LL  
Sbjct: 181 VAIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQNY-GLLVVLVLGILLVV 239

Query: 240 FRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEA 299
           F+  + +   ++++    L+MP++G +      +RFART S++ ++ VPL   + +++E 
Sbjct: 240 FQRLLKSPIFKMKFHTFLLKMPVIGRVSKGLNTARFARTLSILSASSVPLLDGMRIASEV 299

Query: 300 IDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDF 359
           + N  +   + +  +++  G ++S    N  +F  +++ M++ GE++G+++++L   +D 
Sbjct: 300 LQNMRVRAAVDDATARVREGTSLSTALTNTKLFPAMMLYMIASGEKSGQLEDMLERAADN 359

Query: 360 YDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDALKG 407
            DRE + ++       EP+L+V +A +VL + + I  P+  + + + G
Sbjct: 360 QDREFESNVTLALGVFEPMLVVSMAGVVLFIVMAILQPILALNNLISG 407