Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., type II secretion pathway protein F from Caulobacter crescentus NA1000

 Score =  181 bits (459), Expect = 3e-50
 Identities = 115/398 (28%), Positives = 199/398 (50%), Gaps = 4/398 (1%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           MATF Y   +  G    G ++A  E  AA+ L  K + P  I    A+ +      +  L
Sbjct: 1   MATFDYVALDLSGRTRRGQLKAVDEAAAADQLQRKRLAPVKIMASVAKPARVG---RFAL 57

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
              +  +   +F RQ+ +LT     L  ++R +A      +LK  +  V   +  G  LS
Sbjct: 58  GQGLSAKDRSMFTRQLATLTSVST-LEEALRTIALQADKPKLKQVIGEVHAAVLEGYRLS 116

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180
            +M      F PL+ +M+  GE++G L   L +LA   EQ+ + R +I TA+ YP  +  
Sbjct: 117 DAMGRPAKAFPPLYRAMVAAGESSGALPAILDRLADLLEQQQQVRAKITTALVYPIVLAV 176

Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAF 240
              L +  L V VIP+    F   G  LPL TR++I  S     +  L++   V  +FAF
Sbjct: 177 VACLVVAALMVFVIPKVVEQFDSMGQTLPLLTRLVIGLSTGLQTFGWLIVVSAVVAVFAF 236

Query: 241 RAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAI 300
              +     ++  D   LR+P++G ++     +R ART + M+++G+P+ + L L+A  +
Sbjct: 237 LRALRHRPFKLAVDRWLLRLPMIGRLIRDVHAARLARTLATMVASGLPVLEGLILTAGTV 296

Query: 301 DNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFY 360
            N  L+  + +M + I  G A+S     A +F P+++ M + GE +GR++ +L+  +D+ 
Sbjct: 297 RNAVLQAALDDMIAAIREGGALSVAMRRAEVFPPVLVYMTASGESSGRVEAMLMRAADYL 356

Query: 361 DREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPM 398
           +RE +    TL + +EP ++V +  +V  + L I LP+
Sbjct: 357 EREFETFTATLLSLLEPAIIVLLGGVVATIVLSILLPI 394