Pairwise Alignments

Query, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., type II secretion system protein (RefSeq) from Shewanella sp. ANA-3

 Score =  424 bits (1089), Expect = e-123
 Identities = 206/407 (50%), Positives = 296/407 (72%), Gaps = 3/407 (0%)

Query: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSIAQGAAEKSAFDFNWKALL 60
           M  + Y+GR+  G   +G ++AA+E  AA+MLL +GI+P  +      KS   F    L 
Sbjct: 1   MPVYQYRGRSGQGQAVTGQLDAASEGAAADMLLARGIIPLEVKVAKETKS---FTLAQLF 57

Query: 61  TPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNELTNGRNLS 120
              V L+ L IF RQM+SLT++G+P+LR++ GL++  H++++K AL+ +  +LT GR LS
Sbjct: 58  KRKVGLDELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLS 117

Query: 121 ASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMRYPTFVIT 180
           ++M  HP +F  LFVSM+ VGENTG+L+ A +QL+GY E+E ETR+RIK AMRYP FV+ 
Sbjct: 118 SAMNQHPDVFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLI 177

Query: 181 FVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNYWGLLLGIIVGLLFAF 240
            + LAM ILN+ VIP+F  MF+RFG DLP  T++LI TS+ FVNYW L+L I++G +   
Sbjct: 178 AIALAMVILNIMVIPKFAEMFARFGADLPWATKVLIGTSNLFVNYWPLMLVILLGTIIGI 237

Query: 241 RAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQSLALSAEAI 300
           R W +T  G  +WD  +L +P VG I+ R+ LSR+ R+FS+MLSAGVP+ Q+L+L A+A+
Sbjct: 238 RYWHHTEKGEKQWDKWKLHIPAVGSIIERSTLSRYCRSFSMMLSAGVPMTQALSLVADAV 297

Query: 301 DNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDELLLEVSDFY 360
           DN ++  +I+ M+  IESG ++   +  + +FTPLV+QM++VGEETG+ID+LL + +DFY
Sbjct: 298 DNAYMHDKIVGMRRGIESGESMLRVSNQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFY 357

Query: 361 DREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPMWGMMDALKG 407
           + EVDYDLK LTA++EPIL+  VAA+VLVLALGI+LPMW M++ +KG
Sbjct: 358 EGEVDYDLKNLTAKLEPILIGIVAAIVLVLALGIYLPMWDMLNVVKG 404