Pairwise Alignments

Query, 575 a.a., MSHA biogenesis protein MshE from Vibrio cholerae E7946 ATCC 55056

Subject, 566 a.a., Type IV fimbrial assembly, ATPase PilB from Pseudomonas fluorescens FW300-N2E2

 Score =  340 bits (872), Expect = 9e-98
 Identities = 201/554 (36%), Positives = 310/554 (55%), Gaps = 15/554 (2%)

Query: 14  LVEEGIVSEAQLEQALNAQKNTGRRLGDTLISLGFLSETQLLNFLAQQLSLPVIDLSRAH 73
           LV   +++E   +QA    + +   L   L+    +   Q+    ++   + ++DL+   
Sbjct: 13  LVLAELLTEQSAQQAYQQAQRSRIPLVSYLVQNKLVQSRQVAEIASEHFGVALLDLNSLD 72

Query: 74  VDIDAVPLLPEVHARRLRALVIGRSGDTLRIAMSDPADLFAQEALLNQLPDYGF--EFVI 131
            +     L+ E   R+  AL + R G+ L + +SDP +    +A+ +     G   E ++
Sbjct: 73  KETQPSGLVSEKLVRQHHALPLWRRGNKLYVGISDPTN---HQAINDIQFSTGLTTEAIL 129

Query: 132 APEKQLVDGFDRYYRRTKEIVSFAEQLHAEHKTNDSFDFEITDS----DSDEVTVVKLIN 187
             + +L D  ++++  +   +     +  +    +S D    DS    D+D+  VV+ +N
Sbjct: 130 VEDNKLSDAIEKFFESSSTGLEGMGDVDLDGLDIESIDDSKQDSIGGQDTDDTPVVRFVN 189

Query: 188 SLFEDAIQVGASDIHIEPDANVLRLRQRIDGVLHETLLHEVNIASALVLRLKLMANLDIS 247
            +  DAI+ G+SD+H EP   + R+R R DG+L E     + +A+ +  RLK+MA+LDIS
Sbjct: 190 KMLLDAIKGGSSDLHFEPYEKIYRVRVRTDGILREVARPPIQLANRIAARLKVMASLDIS 249

Query: 248 EKRLPQDGRFNIRV-KGQSVDIRMSTMPIQHGESVVMRLLNQSAGVRKLEESGIPPHLLL 306
           E+R PQDGR  +R+ K +S+D R++T+P   GE VV+R+L+ S+    ++  G  P    
Sbjct: 250 ERRKPQDGRLKMRLSKTKSIDFRVNTLPTLWGEKVVIRILDPSSAQMGIDALGYEPDQKD 309

Query: 307 RLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAEDPVEYRISRINQVQV 366
                LK+P G+ILVTGPTGSGKT +LY  LN LNT    I TAEDPVE  +  INQV V
Sbjct: 310 LYMAALKQPQGLILVTGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINMEGINQVNV 369

Query: 367 NPKINLDFSTLLRTFLRQDPDIILVGEMRDQETVEIGLRAALTGHLVLSTLHTNDAVDSA 426
           NP+  LDF+  LR+FLRQDPD+I+VGE+RD ET EI ++AA TGHLVLSTLHTN A ++ 
Sbjct: 370 NPRQGLDFAQALRSFLRQDPDVIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETL 429

Query: 427 LRLIDMGAPGYLVASAVRAVVAQRLVRKVCPDCSGHDEVDEARRQWLVTRFPNQAAAKFT 486
           +RL +MG PG+ +A+AV  ++AQRL RK+C  C     +D      L   FP +    FT
Sbjct: 430 IRLQNMGIPGFNIATAVHLIIAQRLARKLCSHCK--KAIDIPEETLLKEGFPREHLGTFT 487

Query: 487 --RGRGCQNCNLTGYRGRIGVFEMLELDQPMMDCLRANDAVAFSKAARSNTDYKPLLASA 544
                GC+ CN  GY+GR+GV+E+++    +   + A               +  L  S 
Sbjct: 488 IYEPVGCEQCN-NGYKGRVGVYEVVKNTPELQRLIMAEGNSLEIDLQMRKDGFNDLRTSG 546

Query: 545 MELALQGIVSLDEV 558
           +   +QG+ SL+E+
Sbjct: 547 LLKVMQGVTSLEEI 560