Pairwise Alignments

Query, 575 a.a., MSHA biogenesis protein MshE from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., type II secretion system protein E (NCBI) from Rhodospirillum rubrum S1H

 Score =  348 bits (894), Expect = e-100
 Identities = 204/554 (36%), Positives = 309/554 (55%), Gaps = 12/554 (2%)

Query: 10  LGDLLVEEGIVSEAQLEQALNAQKNTGRRLGDTLISLGFLSETQLLNFLAQQLSLPVIDL 69
           LGD L+  G++S  Q+  A   QK +G  LG  L+ LGF+++  L   LAQ       D 
Sbjct: 133 LGDQLLAGGLISRDQMRVAHIEQKRSGAPLGQVLVDLGFITDGVLAEVLAQSSGHDRFDA 192

Query: 70  SRAHVDIDAVPLLPEVHARRLRALVIGRSGDTLRIAMSDPADLFA-QEALLNQLPDYGFE 128
           +    D  A+  LPE  ARRLR   +G  G  LR+AM DP D+ A  E   +   D   E
Sbjct: 193 ASTLADPAALAPLPEREARRLRVFPVGLRGSLLRLAMVDPLDVVAIDEVRRHYGRDVRIE 252

Query: 129 FVIAPEKQLVDGFDRYYRRTKE---IVSFAEQLHAEHKTNDSFDFEITDSDSDEVTVVKL 185
            V++ E ++    DR Y        ++   E L A     +S        D+D   VV+L
Sbjct: 253 PVVSSEAEIAQAIDRSYGHVLALDGVLRELETLGAAGADPESL------RDTDSHPVVRL 306

Query: 186 INSLFEDAIQVGASDIHIEPDANVLRLRQRIDGVLHETLLHEVNIASALVLRLKLMANLD 245
           +N+L  DA++  ASD+H EP    LR+R RIDG L +TL+       A+  RLK++A ++
Sbjct: 307 VNALLLDAVKRRASDLHFEPQGAFLRVRLRIDGTLSQTLIFHKQYWPAVAQRLKILAGMN 366

Query: 246 ISEKRLPQDGRFNIRVKGQSVDIRMSTMPIQHGESVVMRLLNQSAGVRKLEESGIPPHLL 305
           I+++  PQDGRF++ +  + +D R S +P  HGE++V+R+L++SA   KLE+  +    L
Sbjct: 367 IADRLGPQDGRFSMAIAHRKIDFRASVIPTVHGENMVLRVLDRSATPLKLEQLALAHGTL 426

Query: 306 LRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAEDPVEYRISRINQVQ 365
             L   ++RP G++LVTGPTGSGKTTTLY  ++ ++     I+T EDPVEY +  + Q Q
Sbjct: 427 DPLELLVRRPEGLLLVTGPTGSGKTTTLYALMDHISGPEITIVTLEDPVEYDLPLLRQTQ 486

Query: 366 VNPKINLDFSTLLRTFLRQDPDIILVGEMRDQETVEIGLRAALTGHLVLSTLHTNDAVDS 425
           V     L F+  +R  LRQDPD++LVGE+RD +T  + LRAA+TGH V +TLH NDA  +
Sbjct: 487 VREGARLGFADGIRALLRQDPDVMLVGEIRDADTAAMALRAAMTGHQVYATLHANDAPSA 546

Query: 426 ALRLIDMGAPGYLVASAVRAVVAQRLVRKVCPDCSGHDEVDEARRQWLVTRFPNQAAAKF 485
             RL+D+G    L+A ++  V+AQRLVR++CP C        +  +  +         + 
Sbjct: 547 LPRLMDLGLRPGLLAGSLIGVLAQRLVRRLCPHC--RQSYRASPVECKILGLDATDPPEI 604

Query: 486 TRGRGCQNCNLTGYRGRIGVFEMLELDQPMMDCLRANDAVAFSKAARSNTDYKPLLASAM 545
            R RGC+ C  TGY GR+ + E+L +   + D + +   +A  +A  +   Y+P+L    
Sbjct: 605 FRARGCEACGQTGYHGRVPISELLSISPEIDDLIASAAPLAEIRALATRQGYRPMLDDGA 664

Query: 546 ELALQGIVSLDEVM 559
            L  +G++ +  +M
Sbjct: 665 RLVCEGVIDVAALM 678