Pairwise Alignments

Query, 575 a.a., MSHA biogenesis protein MshE from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., type II secretion system protein E (RefSeq) from Shewanella loihica PV-4

 Score =  655 bits (1689), Expect = 0.0
 Identities = 346/572 (60%), Positives = 430/572 (75%), Gaps = 4/572 (0%)

Query: 5   KLRKRLGDLLVEEGIVSEAQLEQALNAQKNTGRRLGDTLISLGFLSETQLLNFLAQQLSL 64
           KL+ RLGDLLV+E I+SEAQL QAL  Q+NTG++LG TLI L  ++E QLL FL+QQL++
Sbjct: 4   KLKMRLGDLLVQEAIISEAQLGQALAEQRNTGKKLGRTLIDLSCITEEQLLKFLSQQLNI 63

Query: 65  PVIDLSRAHVDIDAVPLLPEVHARRLRALVIGRSGDTLRIAMSDPADLFAQEALLNQLPD 124
           P +D+SR  +    V LLPEV ARR RAL +  +GD + +AMSDPADL A + +   L  
Sbjct: 64  PFLDISRRAIPPQVVNLLPEVQARRYRALAVEDNGDHVLVAMSDPADLQAMDNIEVLLAP 123

Query: 125 YGFEFVIAPEKQLVDGFDRYYRRTKEIVSFAEQLHAEHKTNDSFDF-EITDSDSD-EVTV 182
              +  +  E QL++ FD  YRRT EI   A +L  E+  +D FD   +TD+DSD E TV
Sbjct: 124 KAIKIAVVTETQLLEAFDNLYRRTGEIAQIAGKLEEEYAADDQFDLASLTDADSDNETTV 183

Query: 183 VKLINSLFEDAIQVGASDIHIEPDANVLRLRQRIDGVLHETLLHEVNIASALVLRLKLMA 242
           VKL+ S+FEDA+Q+ ASDIHIEP   VLR+RQRIDG L E  L EVNIASALVLRLKLMA
Sbjct: 184 VKLLQSIFEDAVQMRASDIHIEPGDKVLRIRQRIDGQLQENTLQEVNIASALVLRLKLMA 243

Query: 243 NLDISEKRLPQDGRFNIRVKGQSVDIRMSTMPIQHGESVVMRLLNQSAGVRKLEESGIPP 302
            LDISEKRLPQDGRF++ +KG  +D+RMSTMPI HGESVVMRLL+QSAG+  L+E+G+P 
Sbjct: 244 GLDISEKRLPQDGRFHMEIKGHKIDVRMSTMPIYHGESVVMRLLDQSAGLLTLDETGMPA 303

Query: 303 HLLLRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAEDPVEYRISRIN 362
            +L R+R Q+KRPHGM+LVTGPTGSGKTTTLYG L+ELNT+ +KIIT EDPVEY++ RIN
Sbjct: 304 EMLARVRRQIKRPHGMLLVTGPTGSGKTTTLYGVLSELNTADRKIITVEDPVEYQLPRIN 363

Query: 363 QVQVNPKINLDFSTLLRTFLRQDPDIILVGEMRDQETVEIGLRAALTGHLVLSTLHTNDA 422
           QVQVN KI LDFS +LRT LRQDPDII+VGEMRDQETVEIGLR ALTGH VLSTLHTNDA
Sbjct: 364 QVQVNHKIGLDFSNVLRTTLRQDPDIIMVGEMRDQETVEIGLRGALTGHFVLSTLHTNDA 423

Query: 423 VDSALRLIDMGAPGYLVASAVRAVVAQRLVRKVCPDCSGHDEVDEARRQWLVTRFPNQ-A 481
           V SALRL+DMGA  YLVASA+R ++AQRLVR+VC  C+   +   A   WL +      +
Sbjct: 424 VTSALRLLDMGAASYLVASALRVIIAQRLVRRVCHKCAQPYDASAADHAWLSSISGRDFS 483

Query: 482 AAKFTRGRGCQNCNLTGYRGRIGVFEMLELDQPMMDCLRANDAVAFSKAARSNTDYKPLL 541
            AKF  G GCQ+CN +GYRGRIGVFE+LELD+ M+D +R+ +  AF++AA  + ++ PL 
Sbjct: 484 QAKFRIGTGCQSCNGSGYRGRIGVFEILELDEKMIDAMRSGNPQAFAQAAYQSPNFTPLA 543

Query: 542 ASAMELALQGIVSLDEVMSLGEGDSSGLVEPI 573
            SA+    +G+ +++EV  L E D+S    PI
Sbjct: 544 ESALNYLAEGMTTMEEVAKLIE-DASDAQVPI 574