Pairwise Alignments

Query, 575 a.a., MSHA biogenesis protein MshE from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., MSHA biogenesis protein MshE (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  655 bits (1691), Expect = 0.0
 Identities = 341/570 (59%), Positives = 431/570 (75%), Gaps = 5/570 (0%)

Query: 5   KLRKRLGDLLVEEGIVSEAQLEQALNAQKNTGRRLGDTLISLGFLSETQLLNFLAQQLSL 64
           +L+ RLGDLLV+E I++E QL+QAL  Q+ TG +LG TLI L  ++ETQLL FL+QQL+L
Sbjct: 4   RLKMRLGDLLVQESIITEEQLQQALGEQRKTGHKLGRTLIDLRSITETQLLQFLSQQLNL 63

Query: 65  PVIDLSRAHVDIDAVPLLPEVHARRLRALVIGRSGDTLRIAMSDPADLFAQEALLNQLPD 124
           P++D+S+  +  + V L+PEV ARR RAL +   GD++ +AMSDPADL A + L   +  
Sbjct: 64  PLLDISKRSIPSEVVNLIPEVQARRFRALAVEDRGDSVLVAMSDPADLQALDHLETIIAP 123

Query: 125 YGFEFVIAPEKQLVDGFDRYYRRTKEIVSFAEQLHAEHKTNDSFDF-EITDSDSD-EVTV 182
                 +APE+QL+  FD  YRRT +I   A +L  E+  +  FD   +T SDSD E TV
Sbjct: 124 KKLSVAVAPEQQLLQAFDNLYRRTDQIAQIAGKLEEEYAADKMFDLASLTSSDSDNETTV 183

Query: 183 VKLINSLFEDAIQVGASDIHIEPDANVLRLRQRIDGVLHETLLHEVNIASALVLRLKLMA 242
           VKL+ S+FEDA+Q+ ASDIHIEP   VLR+RQRIDG LHET+L+EVNIA+ALVLRLKLMA
Sbjct: 184 VKLLQSIFEDAVQMRASDIHIEPGEKVLRIRQRIDGQLHETILNEVNIAAALVLRLKLMA 243

Query: 243 NLDISEKRLPQDGRFNIRVKGQSVDIRMSTMPIQHGESVVMRLLNQSAGVRKLEESGIPP 302
            LDISEKRLPQDGRF++ +KG  +D+RMSTMPI HGESVVMRLL+QSAG+  L E+G+PP
Sbjct: 244 GLDISEKRLPQDGRFHMEIKGHKIDVRMSTMPIYHGESVVMRLLDQSAGLLTLNETGMPP 303

Query: 303 HLLLRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAEDPVEYRISRIN 362
           H+L R+R Q+KRPHGM+LVTGPTGSGKTTTLYG L+ELNT+ +KIIT EDPVEY++ RIN
Sbjct: 304 HILARIRKQIKRPHGMLLVTGPTGSGKTTTLYGILSELNTADRKIITVEDPVEYQLPRIN 363

Query: 363 QVQVNPKINLDFSTLLRTFLRQDPDIILVGEMRDQETVEIGLRAALTGHLVLSTLHTNDA 422
           QVQVN KI LDFS +LRT LRQDPDII+VGEMRDQETVEIGLR ALTGH VLSTLHTNDA
Sbjct: 364 QVQVNHKIGLDFSNVLRTTLRQDPDIIMVGEMRDQETVEIGLRGALTGHFVLSTLHTNDA 423

Query: 423 VDSALRLIDMGAPGYLVASAVRAVVAQRLVRKVCPDCSGHDEVDEARRQWL--VTRFPNQ 480
           V SALRL+DMGA  YLVASA+R ++AQRLVR+VC +C    +     + WL  V+R  + 
Sbjct: 424 VTSALRLLDMGAASYLVASALRVIIAQRLVRRVCHNCGVEHQPTAQEKAWLNSVSR-QDF 482

Query: 481 AAAKFTRGRGCQNCNLTGYRGRIGVFEMLELDQPMMDCLRANDAVAFSKAARSNTDYKPL 540
             A F  G GCQ+CN +GYRGRIG+FE+LELD+ M+D +R  +   F+ AA  + ++ PL
Sbjct: 483 THANFRIGTGCQSCNGSGYRGRIGIFEILELDEKMIDAMRTGNPQDFACAALQSPNFTPL 542

Query: 541 LASAMELALQGIVSLDEVMSLGEGDSSGLV 570
             SA++   +G+ +++EV  L E  S   V
Sbjct: 543 AESALQYLSEGMTTIEEVAKLVEDVSESQV 572