Pairwise Alignments

Query, 575 a.a., MSHA biogenesis protein MshE from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., type IV pilus biogenesis protein PilB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  358 bits (919), Expect = e-103
 Identities = 212/570 (37%), Positives = 330/570 (57%), Gaps = 19/570 (3%)

Query: 1   MPINKLRKRLGDLLVEEGIVSEAQLEQALNAQKNTGRRLGDTLISLGFLSETQLLNFLAQ 60
           MP   L   L  L + +G+++E Q+  A+   +   + L  TL+    +S   +     +
Sbjct: 1   MPTTGLHLGLSTLFIRKGLLNEEQMATAITKSRQNKQTLVTTLVQTKLVSARSIAELCYE 60

Query: 61  QLSLPVIDLSRAHVDIDAVP--LLPEVHARRLRALVIGRSGDTLRIAMSDPADLFAQEAL 118
           +   P++DL  A  D+ A+P   L +    + R L + + G+ L IA SDP ++ A E  
Sbjct: 61  EYGTPLLDL--AEFDVSAIPEEFLNKKLIEKHRCLPLFKRGNRLYIATSDPTNIAALEEF 118

Query: 119 LNQLPDYGFEFVIAPEKQLVDGFDRYYRRTKEIVSFAEQLHA-----EHKTNDSFDFEIT 173
                 +  E ++  E +L    ++        +  +    A     E    D  + E T
Sbjct: 119 QFSAGLHA-EAILVEEDKLAKALEKVLEEDITGLDLSGMDEAALAGIEITDTDKRNEETT 177

Query: 174 DSDSDEVTVVKLINSLFEDAIQVGASDIHIEPDANVLRLRQRIDGVLHETLLHEVNIASA 233
              SD+  +V  IN +  DAI+ GASD+H EP     R+R RIDG+LHE     +++A  
Sbjct: 178 GESSDDAPIVIYINKILTDAIRKGASDLHFEPYEKRYRIRFRIDGILHEVSEPPISLAGR 237

Query: 234 LVLRLKLMANLDISEKRLPQDGRFNIRV-KGQSVDIRMSTMPIQHGESVVMRLLNQSAGV 292
           L  RLK+M+ LDI+E+R+PQDGR  +++ + +S+D R+ST+P   GE +VMR+L+ S+  
Sbjct: 238 LSARLKVMSKLDIAERRVPQDGRIKMKLSRTKSIDFRVSTLPTLWGEKIVMRILDSSSAQ 297

Query: 293 RKLEESGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAED 352
             +E+ G  P         L +P GMILVTGPTGSGKT +LY  LN LNT+ + I TAED
Sbjct: 298 LGIEKLGYEPDQEKLYLEMLAKPQGMILVTGPTGSGKTVSLYTGLNILNTAERNISTAED 357

Query: 353 PVEYRISRINQVQVNPKINLDFSTLLRTFLRQDPDIILVGEMRDQETVEIGLRAALTGHL 412
           PVE  +  +NQV +N K  L F++ LR+FLRQDPD+++VGE+RD ET EI ++AA TGHL
Sbjct: 358 PVEINLEGVNQVHINLKAGLTFASALRSFLRQDPDVVMVGEIRDLETAEIAIKAAQTGHL 417

Query: 413 VLSTLHTNDAVDSALRLIDMGAPGYLVASAVRAVVAQRLVRKVCPDCSGHDEVDEARRQW 472
           VLSTLHTN A ++  RLI+MG PGY +AS+V  ++AQRL R++CP+C   +++ +   Q 
Sbjct: 418 VLSTLHTNSAAETLTRLINMGVPGYNIASSVNLIIAQRLARRLCPECKQPEQIPDHELQR 477

Query: 473 LVTRFPN-QAAAKFTRGR--GCQNCNLTGYRGRIGVFEMLEL-DQPMMDCLRANDAVAFS 528
           L   F + Q A  FT  +  GC++C+  GY+GR+G++E++++ D+     +   +++  +
Sbjct: 478 L--GFSDVQIAQGFTTYKPVGCEHCS-GGYKGRVGIYEVMKMSDEIARTIMEGGNSLQIA 534

Query: 529 KAARSNTDYKPLLASAMELALQGIVSLDEV 558
             A++    + L  S +   LQG+ S+ EV
Sbjct: 535 GQAKAQ-GMRDLRQSGLLKVLQGVTSIAEV 563