Pairwise Alignments

Query, 575 a.a., MSHA biogenesis protein MshE from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., type II secretion system protein E (GspE) (RefSeq) from Shewanella sp. ANA-3

 Score =  329 bits (844), Expect = 1e-94
 Identities = 173/383 (45%), Positives = 248/383 (64%), Gaps = 5/383 (1%)

Query: 178 DEVTVVKLINSLFEDAIQVGASDIHIEPDANVLRLRQRIDGVLHETLLHEVNIASALVLR 237
           D+  ++KLIN+L  +AI+  ASDIHIE     L +R RIDGVL E L     ++S LV R
Sbjct: 137 DDAPIIKLINALLSEAIKEEASDIHIETYEKQLVVRFRIDGVLKEVLKPNRKLSSLLVSR 196

Query: 238 LKLMANLDISEKRLPQDGRFNIRVKGQSVDIRMSTMPIQHGESVVMRLLNQSAGVRKLEE 297
           +K+MA LDI+EKR+PQDGR ++R+ G++VD+R+STMP  HGE VV+RLL+++AG   L++
Sbjct: 197 IKVMARLDIAEKRVPQDGRISLRIAGRAVDVRVSTMPSSHGERVVLRLLDKNAGNLDLKQ 256

Query: 298 SGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAEDPVEYR 357
            G+   +  +    ++RPHG+ILVTGPTGSGK+TTLY  L E+N+    I+T EDP+EY 
Sbjct: 257 LGMTDSIRAQFDEIIRRPHGIILVTGPTGSGKSTTLYAGLTEINSKDTNILTVEDPIEYE 316

Query: 358 ISRINQVQVNPKINLDFSTLLRTFLRQDPDIILVGEMRDQETVEIGLRAALTGHLVLSTL 417
           +  I Q QVN K ++ F+  LR  LRQDPD++++GE+RD ET +I ++A+LTGHLV+STL
Sbjct: 317 LEGIGQTQVNTKADMTFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVISTL 376

Query: 418 HTNDAVDSALRLIDMGAPGYLVASAVRAVVAQRLVRKVCPDCSGHDEVDEARRQWLVTRF 477
           HTN A  +  RL DMG   +LV+S++  V+AQRL+R +CP C      DE  R+ L    
Sbjct: 377 HTNTASGAITRLQDMGVEPFLVSSSLLGVLAQRLIRTLCPKCKTEHVPDERERELLGMAA 436

Query: 478 PNQAAAKFTRGRGCQNCNLTGYRGRIGVFEMLELDQPMMDCLR-ANDAVAFSKAARSNTD 536
            +       R  GC+ C  +GYRGR G+ E+L +D  + + +      +A  K  R +  
Sbjct: 437 DDH--RHIYRANGCKACGSSGYRGRTGIHELLLVDDNVRELIHGGRGELAIEKYIRQSV- 493

Query: 537 YKPLLASAMELALQGIVSLDEVM 559
              +    M   L GI +L+EV+
Sbjct: 494 -PSIRHDGMSKVLSGITTLEEVL 515