Pairwise Alignments

Query, 389 a.a., MSHA biogenesis protein MshN from Vibrio cholerae E7946 ATCC 55056

Subject, 386 a.a., TPR repeat-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  138 bits (348), Expect = 2e-37
 Identities = 114/403 (28%), Positives = 188/403 (46%), Gaps = 43/403 (10%)

Query: 7   MSVVNEALAKSAQRSHSRLSNIERIDVAK------PKARPAWLWVMLGFGVSLAVG--GW 58
           MSV+N  L    +R  S    ++ + V        P++R  WL + L   + LA+G   W
Sbjct: 1   MSVINTMLKDLDKRQQSH--GLDELPVPPLQYRQAPQSRLPWLLLALLALLLLAMGYLAW 58

Query: 59  S--ISLQSVD-TIPSSAEVVRPEVPSPTQKTTQQSIALYQAPVNSEALVKNETLVQKETL 115
               +L+  +  +    +++  E+ S   K  Q S+         E +  NET +  +  
Sbjct: 59  DRYAALERTNLALQQDNQILAQEIASGDLK--QPSV---------EKVASNETALAADEA 107

Query: 116 PKNETSVKNA------VLAKVEGSPTSLKQTANRQREQTALGSELNAEPVLNLVDNSEPS 169
           P  E+  + +      V AK+E S  +  +             ++ ++P +     S+PS
Sbjct: 108 PAEESKTEASLAADAQVTAKIESSAEASAELMTTSNTDPVAEPKVESKPAVE----SKPS 163

Query: 170 FFEEEV-------SSLPSSSPVMIVEQVSLTPEQLAQKALQRAQKAMESNELQTAVSAYT 222
              + V       ++   ++  M V +V L+PE LA+K   + + A E  +L  AV  ++
Sbjct: 164 AKSQRVRVEQTADANTAKTTGSMAVTEVKLSPEALAEKRFSQGKSAQEGGQLSQAVDDFS 223

Query: 223 EALRYTPHDEMARQKLAALYYGKGDGRKAFDLMQAGIERNPDGEVLRLALAKLLVKEKQE 282
           EA+R  P    ARQ LAALYYG+G   +A  ++Q G+ R P      L LAK+L  +   
Sbjct: 224 EAIRLDPTLHGARQHLAALYYGQGQLGEAKTVLQQGLARYPQELDYALMLAKVLEAQGDS 283

Query: 283 ASALVPLAYLPSQPSI--EYLSLRAALAQKTKQDEIARESYQQLTEKDPNNGRWWLGLAI 340
             AL  L  +P    +  +    ++ LAQ+  Q  +A ESY++L   +P   +WW+GLA 
Sbjct: 284 QGALAALGTIPDDHLLAKQKWVQQSHLAQQASQFALAEESYRRLARVEPTQAKWWMGLAY 343

Query: 341 QQERALQWPAAQHAYQQALNKVGLSSQSQAFIHQRLQLLASLE 383
             +   ++ +A+ AY QAL   GLS Q+  FI QRL  L  +E
Sbjct: 344 ALDSQQKYTSAKQAYGQALGLSGLSQQASDFIQQRLAQLGDIE 386