Pairwise Alignments

Query, 389 a.a., MSHA biogenesis protein MshN from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., TPR repeat-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  125 bits (313), Expect = 3e-33
 Identities = 125/450 (27%), Positives = 196/450 (43%), Gaps = 84/450 (18%)

Query: 7   MSVVNEALAK--SAQRSHSRLSNI---ERIDVAKPKARPAWLWVMLGFGVSLAVGGWSI- 60
           MSV+N+ L      Q+ HS LSN+   +   + +P     WL + L   VSL VGG S+ 
Sbjct: 1   MSVINKMLQDLDKRQQGHS-LSNVAVHQAQYLGRPNPSRKWLVISL---VSLLVGGLSVY 56

Query: 61  ----------------------------SLQSVDTIPSSAEVVRPEVPS-PTQKTTQQ-- 89
                                       +   +DT P   E  +    + PT+ T +   
Sbjct: 57  AFQASYGVKSVADNSVNPVASSQTQPDNASPQIDTSPLETETTKSTYTTIPTEPTAEMVQ 116

Query: 90  -------------SIALYQAPVNSEALVKNETLVQKETLPKNE-------TSVKNAVLAK 129
                        S +   AP  +++   N   V+  + P+ E       T   N     
Sbjct: 117 VSPSSTEVPAKDMSASAESAPSVAQSARLNAAQVEPTSEPRAEPVATNTSTDTSNNAALT 176

Query: 130 VEGSPTSLKQTANRQREQTALGSELNAEPVLNLVDNSEPSFFEEEV---------SSLPS 180
            E + T   Q  ++Q    A  +++NA      +  ++P   E  V         +S  +
Sbjct: 177 QESAQT---QAESQQVAVKANQADVNANQSEVKIIQTDPKASEPVVPAATQASRQTSPQA 233

Query: 181 SSPV---------MIVEQVSLTPEQLAQKALQRAQKAMESNELQTAVSAYTEALRYTPHD 231
           SSP          M + +V L+P QLAQK L  A  A +  +L  A+  Y +ALR  P  
Sbjct: 234 SSPASAQAQSTGQMAIREVKLSPSQLAQKQLVLAADAEKQGQLVKAMDYYAKALRLDPSL 293

Query: 232 EMARQKLAALYYGKGDGRKAFDLMQAGIERNPDGEVLRLALAKLLVKEKQEASALVPLAY 291
             +R++LAAL+YG+G+  +A +++  G    P      L LA++     +  SAL  LA 
Sbjct: 294 HESRKQLAALHYGQGELAQAAEVLAQGRLLYPQEFEFALLLARVQHVMGETDSALASLAQ 353

Query: 292 LPSQPSIEYLSLRAA--LAQKTKQDEIARESYQQLTEKDPNNGRWWLGLAIQQERALQWP 349
           +P   S+      A   LAQK  Q  +  ++Y++L +++P  G+WW+GLA   +   Q+ 
Sbjct: 354 IPDSHSLARQKWLAQTDLAQKQGQYPLVEQAYRKLLQQEPQQGKWWMGLAYALDSQQQFG 413

Query: 350 AAQHAYQQALNKVGLSSQSQAFIHQRLQLL 379
            A  AY+ AL+  GLS+Q+ AFI QRLQ L
Sbjct: 414 PASQAYRTALSYSGLSTQATAFIEQRLQQL 443