Pairwise Alignments

Query, 281 a.a., MSHA biogenesis protein MshM from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., MSHA biogenesis protein MshM (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  258 bits (659), Expect = 1e-73
 Identities = 144/273 (52%), Positives = 179/273 (65%), Gaps = 4/273 (1%)

Query: 1   MYLSHFGLEQLPFHLTPDTELFLGLAPHFEAIQTLSAAIEMGEGVSKLTGEVGTGKTMVC 60
           MYL HFGL Q PF LTP+T  F GL+PH EA+Q L  A++ GEG  K+TGEVGTGKT++C
Sbjct: 1   MYLKHFGLGQAPFSLTPNTGFFFGLSPHVEALQVLQTALQTGEGFIKVTGEVGTGKTLIC 60

Query: 61  RMLLTHLGDEVALIYLPNPMLSGEELRQAVAAELQLDVASPV---RVVEQIQTRLIELHQ 117
           R L+  L       YLPNP L+  ELR AVA EL L   S +   ++   IQ +L+ L  
Sbjct: 61  RKLINELPQGFHCAYLPNPYLTPAELRWAVANELGLKYTSEIDQQQLTGLIQQQLLALST 120

Query: 118 QGKRVVALVDEAQALSDEALETLRLFGNLETEQTKLLQIVLIGQPELDVRLAQHHLRQFR 177
            G  +V ++DEAQAL DE+LE LRLF NLETE  KLLQ+VL GQPELD RL +   RQ R
Sbjct: 121 HGHAIVLVLDEAQALPDESLEALRLFTNLETESRKLLQVVLFGQPELDERLKRQAFRQLR 180

Query: 178 QRITFNANLRPLTQAETEVYIESRLQKA-QAPYPLFNATLKKAVWRASQGIPRLINQICH 236
           QRITF+ NLRPLT  ET+ YI  RL  A  A   LF+  + + + +AS+GIPRLIN + H
Sbjct: 181 QRITFSYNLRPLTWDETDAYIRYRLAVAGHAGQALFSPKITRKIAQASRGIPRLINILAH 240

Query: 237 KALLLAWHEQSPLVNQHHLFAAIHDTYDSCKPR 269
           KAL+L++ E +  V   HL  AI DT D+   R
Sbjct: 241 KALMLSFGEGATQVRMSHLKGAICDTEDASPTR 273