Pairwise Alignments

Query, 281 a.a., MSHA biogenesis protein MshM from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., general secretion pathway protein a (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  168 bits (426), Expect = 2e-46
 Identities = 104/279 (37%), Positives = 150/279 (53%), Gaps = 4/279 (1%)

Query: 1   MYLSHFGLEQLPFHLTPDTELFLGLAPHFEAIQTLSAAIEMGEGVSKLTGEVGTGKTMVC 60
           MY + +GL   PF + P+         H EA+  L+  +    G   LTGEVGTGKT V 
Sbjct: 1   MYKAFYGLSDNPFSIAPNPHYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVS 60

Query: 61  RMLLTHLGDEVALIYLPNPMLSGEELRQAVAAELQLDVA-SPV--RVVEQIQTRLIELHQ 117
           R LL  L D     ++ NP L+  EL   +  EL++    +P   ++ + +   L+  H+
Sbjct: 61  RCLLGQLPDNTDTAFILNPSLTELELLATLCDELKISYGENPTLKQLTDHLSRFLLANHE 120

Query: 118 QGKRVVALVDEAQALSDEALETLRLFGNLETEQTKLLQIVLIGQPELDVRLAQHHLRQFR 177
           +G++ V ++DEAQ L  E LE LRL  NLET+  KLLQ++LIGQPEL + L +  LRQ  
Sbjct: 121 KGRKTVLIIDEAQHLRAEVLEQLRLLTNLETDTKKLLQVILIGQPELQLLLKRQELRQLA 180

Query: 178 QRITFNANLRPLTQAETEVYIESRLQKAQAPYPLFNATLKKAVWRASQGIPRLINQICHK 237
           QRIT   +L PL + E  +Y+  RLQ A    PLF     K + + S GIPRLIN +C +
Sbjct: 181 QRITARYHLLPLNEDEITLYVLHRLQVAGRFEPLFTRKAIKVLHKYSGGIPRLINLLCER 240

Query: 238 ALLLAWHEQSPLVNQHHLFAAIHDTYDSCKPRFKTPILW 276
           AL+  + +    ++ H +  A  +     KP  +   LW
Sbjct: 241 ALMAGYAQSKVPIDHHMVRQAAAEVLGEEKPS-QNKFLW 278