Pairwise Alignments

Query, 281 a.a., MSHA biogenesis protein MshM from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., conserved domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  108 bits (269), Expect = 4e-28
 Identities = 84/249 (33%), Positives = 124/249 (49%), Gaps = 12/249 (4%)

Query: 2   YLSHFGLEQLPFHLTPDTELFLGLAPHFEAIQTLSAAIEMGEGVSKLTGEVGTGKTMVCR 61
           YL   GL Q PF  +PD   +     H   +  L  +I +  G++ + G+VGTGK+ + R
Sbjct: 37  YLEMLGLAQEPFSTSPDPLAYYRAPEHEHCLHRLEVSIRLKRGLNVVIGDVGTGKSTLSR 96

Query: 62  MLLTHLG---DEVALIYLPNPMLSGEELRQAVA---AELQLDVASPVR-VVEQIQTRLIE 114
            LL  L    D +  + L     S +E  + +    A+  +    P R  +E IQ  L  
Sbjct: 97  CLLRALDGQEDIIPHLILDPGFESADEFARYICRLLADGPVPDTLPRRDCIEAIQNALFS 156

Query: 115 LH-QQGKRVVALVDEAQALSDEALETLRLFGNLETEQTKLLQIVLIGQPELDVRLAQHHL 173
           L  ++G+ V+  +DE Q L+ + LE LR   N ET   KLLQIV+ GQ EL+  +    L
Sbjct: 157 LAVERGRIVLLCIDEGQKLAPDCLEVLRELLNYETNTEKLLQIVIFGQRELEEVI--DGL 214

Query: 174 RQFRQRITFNANLRPLTQAETEVYIESRLQKAQAP--YPLFNATLKKAVWRASQGIPRLI 231
             F+ RI     LRPL + ET   +  RL+ A  P    LF      AV RA++G PR I
Sbjct: 215 PNFKDRINEYLVLRPLDRRETIRLVRHRLRLAGGPAGERLFTLGALLAVHRATRGYPRRI 274

Query: 232 NQICHKALL 240
            ++CH+ ++
Sbjct: 275 MRLCHQLVM 283