Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., General secretion pathway protein D from Pseudomonas fluorescens FW300-N2E2

 Score =  115 bits (289), Expect = 5e-30
 Identities = 103/400 (25%), Positives = 172/400 (43%), Gaps = 33/400 (8%)

Query: 150 VDYLQFKRTGR---SLTSITTGTITNTDTNNSNS-----SSSSSSSISSNSSSDGSSSNS 201
           V YL+  + G+   +L  + TG      ++NS S      +S++      SS DG+S  +
Sbjct: 334 VVYLRNAQAGKLAQALRGLLTGESEGESSDNSRSVLSGMGASTNGQSGQGSSGDGTSGTT 393

Query: 202 NSNRSDARGGTEIETTNESDFWPLLEKAVAQLLGGSGGQTVIVNPQAGVLTLRAYPDEIR 261
           + N S +  G    +   +   P   K        +GG T+  +     L + A     R
Sbjct: 394 SGNASTSGNGYGQGSNGTT---PASTKNEQNTAFSAGGVTIQADATTNTLLISAPDPLYR 450

Query: 262 QVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKA-FSSNGANYKIGSGSITQD 320
            + E + +  QR   QV++E+ I+EV   D  + G+ W       +G    +  G    +
Sbjct: 451 NLREVIDLLDQR-RAQVVIESLIVEVGEDDASEFGVQWQTGNLGGSGVIGGVNLGGTALN 509

Query: 321 SNGNPITSVLPGLDAIGNLLGGQSNVVISSG-----SFDAVISFMATQGDLNVLSSPRVT 375
            NG     VLP     G  LG  +  V   G         +   + ++G  NVLS+P + 
Sbjct: 510 LNGKTSIDVLPQ----GLNLGVVNGTVDIPGIGKILDLKVLARALKSKGGTNVLSTPNLL 565

Query: 376 ASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNV 435
             +N+ A I VG    +V+   S V  G     +P  T+T    G+ L+V PQI + G V
Sbjct: 566 TLDNEAASIFVGQTIPFVS--GSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTV 623

Query: 436 LLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTV 495
            L ++  V  V+ +                 ++ R  D+ I   DG ++V+GGL++    
Sbjct: 624 KLDIYQEVSSVDNRASSTTG---------IVTNKRAIDTSILLDDGQIMVLGGLLQDGYS 674

Query: 496 DQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535
                VP+L  +P +G LFRN  +   KT L++ L+P ++
Sbjct: 675 QSNDAVPWLSTIPGIGALFRNERRQITKTNLMVFLRPYII 714