Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 759 a.a., General secretion pathway protein D from Xanthomonas campestris pv. campestris strain 8004

 Score = 89.4 bits (220), Expect = 5e-22
 Identities = 93/403 (23%), Positives = 172/403 (42%), Gaps = 54/403 (13%)

Query: 159 GRSLTSITTGTITNTDTNNSNSSSSSSSSISSNSSSDG-----SSSNSNSNRSDARGGTE 213
           G S  S+  G + N   NNS  +    S  SS+ ++ G     S+ +S S  S + GG+ 
Sbjct: 358 GNSGPSLVPGGVVNMLGNNSGGADRDESLGSSSGATGGDIGGTSNGSSQSGTSGSFGGSS 417

Query: 214 IE-------TTNESDFWPLLEKAVAQLLGGSGGQTVIVNPQAGVLTLRAYP-DEIRQVNE 265
                    +TN++           ++ G   G + +      ++   A     IR V E
Sbjct: 418 GSGMLQLPPSTNQNG------SVTLEVEGDKVGVSAVAETNTLLVRTSAQAWKSIRDVIE 471

Query: 266 FLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNP 325
            L +   ++H    +EA+I EVTL+   Q G+NW   +  N       +     D +G P
Sbjct: 472 KLDVMPMQVH----IEAQIAEVTLTGRLQYGVNW---YFENAVTTPSNA-----DGSGGP 519

Query: 326 ITSVLPGLDAIGNLLGGQSNVVIS----SGSFDAVISFMATQGDLNVLSSPRVTASNNQK 381
                 G    G++ G  ++  ++      +  A+IS +    +L +L +P V   NN +
Sbjct: 520 NLPSAAGRGIWGDVSGSVTSNGVAWTFLGKNAAAIISALDQVTNLRLLQTPSVFVRNNAE 579

Query: 382 AVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHV-- 439
           A + VG+    +   S   G G ++  S   ++    +G+ L V P++   G V L +  
Sbjct: 580 ATLNVGS-RIPINSTSINTGLGSDSSFS---SVQYIDTGVILKVRPRVTKDGMVFLDIVQ 635

Query: 440 -------HPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKS 492
                   PA       T      S    + +    ++   +V   ++GD +++ GL+  
Sbjct: 636 EVSTPGARPAACTAAATTT---VNSAACNVDINTRRVKTEAAV---QNGDTIMLAGLIDD 689

Query: 493 NTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535
           +T D  + +PFL  +P +G LF   T+ + + E+++L+ P++V
Sbjct: 690 STTDGSNGIPFLSKLPVVGALFGRKTQNSDRREVIVLITPSIV 732