Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., putative type II and III secretion system outermembrane protein, secretin (RefSeq) from Shewanella amazonensis SB2B

 Score = 96.7 bits (239), Expect = 2e-24
 Identities = 85/289 (29%), Positives = 134/289 (46%), Gaps = 39/289 (13%)

Query: 278 VILEAKILEVTLSDGYQQGINW-----------SKAFSSNGANYKIGSGSITQDSNGNPI 326
           V +E KI+E   S     G+ W           +KAF++N   + + S     +S G  +
Sbjct: 150 VKMEVKIVEFNKSTLNNIGVQWENVMSGPAFGAAKAFTANPI-FSVSSPGQYANSIGGAV 208

Query: 327 TSVLPGLDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKV 386
           +  +  LD  G    G   +V   GS    I  +A +GD  +L+ P +T  + + A    
Sbjct: 209 SDAIGVLDTRGWSYFG---IVTGIGS---QIQLLAEKGDARMLAEPNLTTRSGEAASFLA 262

Query: 387 GTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEV 446
           G +      + +V G G     S DI    +  GI L++ P +D   N++  V   V  V
Sbjct: 263 GGE----IPIRTVSGVG-----SVDIQYKEY--GIRLNIEPVVDADNNIVSRVMAEVSAV 311

Query: 447 EQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGD 506
           +         S ++E        R ++SVI  K+   +VI GL+ S     V+K P LGD
Sbjct: 312 DP--------SIQLEGSAPGFLTRRTESVINVKNKQTMVISGLVNSEMSKVVNKFPLLGD 363

Query: 507 VPALGHLFRNTTKLTQKTELVILLKPTVV--GVNTWQKELERSRSLLQE 553
           +P LG LF++     +KTELVI + PTVV  G ++ +K L R+R L+ +
Sbjct: 364 IPILGELFKSRNFREEKTELVIFVTPTVVYPGEDSHEKSLSRARELVDD 412