Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 703 a.a., type II and III secretion system protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  120 bits (301), Expect = 2e-31
 Identities = 90/320 (28%), Positives = 155/320 (48%), Gaps = 44/320 (13%)

Query: 242 VIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHR-QVILEAKILEVTLSDGYQQGINWS 300
           ++ +     L + A PD++R +     I+Q  + R QV++EA I+EV   D    G+ W+
Sbjct: 318 IMAHTDTNALVISAEPDQMRTLESV--INQLDIRRAQVLVEAIIVEVAEGDDVGFGVQWA 375

Query: 301 KAFSSNGANY--------KIGSGS-----------ITQDSNGNPITSVLP----GLDAIG 337
              S  G  +        +IG+G             T D NGNPI S  P     +  + 
Sbjct: 376 TE-SGGGTQFNNLGPTIGEIGAGIWQARGEEASEVTTIDGNGNPIVSKNPEKRGDITLLA 434

Query: 338 NLLGGQSNVV--ISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTD 395
             LG  + +   ++ G F A+I  +++  + NVL++P +T  +NQ+A   VG +   +T 
Sbjct: 435 QALGKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEAAFIVGDEVPVLTG 494

Query: 396 LSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILY 455
             +      N  ++P  T+     G+ L VTPQI++   V L +   V  +  +T     
Sbjct: 495 AQN----SSNGNSNPFQTVERKEVGVKLKVTPQINEGNAVKLAIEQEVSGINGKTG---- 546

Query: 456 RSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFR 515
               +++  A    R   + + A  G +VV+GGL+     + V KVP LGD+P LGHLF+
Sbjct: 547 ----VDVTFAT---RRLTTTVMADSGQIVVLGGLINEEVQESVQKVPILGDIPLLGHLFK 599

Query: 516 NTTKLTQKTELVILLKPTVV 535
           +++   +K  L++ +KPT++
Sbjct: 600 SSSSGKKKKNLMVFIKPTII 619