Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 547 a.a., type II and III secretion system protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  160 bits (406), Expect = 9e-44
 Identities = 137/509 (26%), Positives = 229/509 (44%), Gaps = 56/509 (11%)

Query: 47  PSVEADLMPDMDTLTASEPKTLQRFRIQAEDVEAKA-FFASLVQGTEYSAAIHPAVTGRI 105
           P +   L P +  L A  P+  +R  + A+     A    +L +       + P V G +
Sbjct: 52  PPIPPLLEPQLAALPA--PEEARRVTVIAQSPTPVADLLVALCREVGVDLEMSPEVGGLV 109

Query: 106 TLNLTDVTLDEALGVVRDLYGFEVVKEGKVIQVYPAGLRTVTIPVDYLQFKRTGRSLTSI 165
            L+L D    E +G +  + G ++     V++V           +D L   R+       
Sbjct: 110 VLSLRDRPFPEVVGRLGAMAGLDITLVDGVVRVDLDRPLPAIYHLDALNMARS------- 162

Query: 166 TTGTITNTDTNNSNSSSSSSSSISSNSSSDGSSSNSNSNRSDARGGTEIETTNESDFWPL 225
                       S  S S+S+ + ++ ++ G+S +S  N S     + + + +++D W  
Sbjct: 163 ------------SEGSVSTSTDVFTSVAAKGNSRDSRGNAS----ASLVSSASKADLWGE 206

Query: 226 LEKAVAQLLGGSGGQTVI-------------VNPQAGVLTLRAYPDEIRQVNEFLGISQQ 272
           +   + Q+LG + G  +              +N QAG++T+     + R+V ++L   +Q
Sbjct: 207 VAGGLGQILGRAEGDPLAEEARDGVARGGFHINRQAGLITVVGRRAQQREVADYLAGVRQ 266

Query: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPG 332
            M  QV++EAKI+EVTL D Y+ GI+W               G    D  G       P 
Sbjct: 267 SMATQVLIEAKIVEVTLKDQYRGGIDWKVLTDG---------GEFLLDIPGAAGVVAPPL 317

Query: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDE-Y 391
            DA   L  G +   +      A++ F+ T G +  LSSPR+T  NNQ AV+KV  +E Y
Sbjct: 318 TDAAATLSLG-TRATLGPVELSALVQFIKTFGAVRTLSSPRLTVMNNQTAVLKVAENEVY 376

Query: 392 YVTDLSSVVGTG-DNAQASPDITLTPFFSGISLDVTPQIDDQGN-VLLHVHPAVIEVEQQ 449
           +V D+ +V   G      S +I   P   G+ + V P ++  G  V L + P +  +  +
Sbjct: 377 FVVDVDTVTSDGVTQTTYSSEINTVPI--GLVMTVQPSVEPGGGRVTLGLRPTISRIADR 434

Query: 450 TKK--ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDV 507
                +  ++  ++  +    +RE DSV+   +G VVV+GGLM+         VP LGDV
Sbjct: 435 VADPAVSLQNLSVQSLIPVVEVRELDSVVTIDNGAVVVMGGLMQERMGRDEEGVPGLGDV 494

Query: 508 PALGHLFRNTTKLTQKTELVILLKPTVVG 536
           P +G  FR+ +  T   ELV+LL+ TV+G
Sbjct: 495 PLIGRAFRHDSADTDVVELVVLLRATVIG 523