Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 713 a.a., type IV pilus secretin PilQ from Ralstonia solanacearum IBSBF1503

 Score =  116 bits (291), Expect = 3e-30
 Identities = 124/530 (23%), Positives = 217/530 (40%), Gaps = 83/530 (15%)

Query: 19  GHRDPVEAKQALNQAINETNSRQIDQLPPSVEADLMPDMDTLTASEPKTLQRFRIQAEDV 78
           G R  +E +     +  +T+++ + ++ P+ E     D + L +      +R  +  +++
Sbjct: 247 GARLIIEPRGNWQYSSYQTDTQFVVEVRPTKE-----DPNKLISGPGYRGERMSLNFQNI 301

Query: 79  EAKAFFASLVQGTEYSAAIHPAVTGRITLNLTDVTLDEALGVVRDLYGFEVVKEGKVIQV 138
           + ++        T  +     +VTG ++L L DV  D+AL +V D  G    + G V+ V
Sbjct: 302 DIRSLLQVFADFTNLNIVTSDSVTGTLSLRLKDVPWDQALQIVLDSKGLASRRNGNVLWV 361

Query: 139 YPAGLRTVTIPVDYLQFKRTGRSLTSITTGTITNTDTNNSNSSSSSSSSISSNSSSDGSS 198
            P G    T     L+ ++    L  + +        N   +    +  + + + + G++
Sbjct: 362 APRG-ELATKEKAELESQQQVTELEPLRSQVFR---LNYQRADDVRNMLLGTGTGAAGAT 417

Query: 199 -----SNSNSNRSDARGGTEIETTNESDFWPLLEKAVAQLLGGSGGQTVIVNPQAGVLTL 253
                S   S  SDAR       TN+                               L +
Sbjct: 418 ASRILSKRGSLTSDAR-------TNQ-------------------------------LFV 439

Query: 254 RAYPDEIRQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIG 313
              P ++ +V  FL +      RQV++EA+I+E   +     G     A  +NGA Y   
Sbjct: 440 SDIPSKLEEVQAFL-LKIDIPVRQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNS 498

Query: 314 SGSITQDSNGNPITSVLPGLDAIGNLLGGQSNVVISSGSFDA--------VISFMATQGD 365
             ++T     N   +  P +    N + G S   ++   F+A         +S +   G 
Sbjct: 499 YTNVTSPITTNGTWTTDPAVSLPANGINGVSAASVAVSLFNAGAGRFLALELSALEADGR 558

Query: 366 LNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNAQASPDITLTPFFSGISLDV 425
             ++SSPRV  ++N KA+I+ GT+  Y    SS   +    +A+           + L+V
Sbjct: 559 GKIISSPRVVTADNIKALIEQGTELPYQAATSSGATSVQFRKAN-----------LKLEV 607

Query: 426 TPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGDVVV 485
           TP+I   GNV L V      V  QT                 + +   + +  ++G  VV
Sbjct: 608 TPKITPDGNVFLDVDVNKDSVGTQTTNGF-----------AINTKHVQTQVLVENGGTVV 656

Query: 486 IGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 535
           IGG+   N    V+KVP LGD+P LG+LF++T K   +TEL++ L P V+
Sbjct: 657 IGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTELLVFLTPRVL 706