Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 707 a.a., general secretion pathway protein D (RefSeq) from Shewanella loihica PV-4

 Score =  110 bits (274), Expect = 2e-28
 Identities = 86/320 (26%), Positives = 149/320 (46%), Gaps = 45/320 (14%)

Query: 242 VIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHR-QVILEAKILEVTLSDGYQQGINWS 300
           ++ +P    L + A PD++R +     I+Q  + R QV++EA I+EV   D    G+ W+
Sbjct: 316 IMAHPDTNALVISAEPDQMRTLESV--INQLDIRRAQVLVEAIIVEVAEGDDVGFGVQWA 373

Query: 301 K------------------------AFSSNGANYKIGSG-SITQDSNGNPITSVLPGLDA 335
                                    A     +N   GSG ++T   N +    +     A
Sbjct: 374 TEAGGGTQFNNLGPTIGEIGAGIWAAQDEKASNSCTGSGDNLTCTDNPDKKGDITLLAQA 433

Query: 336 IGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTD 395
           +G + G    V +  G F A+I  +++    NVL++P +T  +NQ+A   VG +   +T 
Sbjct: 434 LGKVNGMAWGVAM--GDFGALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPVLTG 491

Query: 396 LSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILY 455
             +      N  ++P  T+     G+ L V PQI++   V L +   V  +  +T     
Sbjct: 492 SQN----SSNGNSNPFQTVERKEVGVKLKVVPQINEGTTVKLTIEQEVSGINGKTG---- 543

Query: 456 RSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFR 515
               +++  A    R   + + A  G +VV+GGL+     + V KVPFLGD+P LGHLF+
Sbjct: 544 ----VDVTFAT---RRLTTTVMADSGQIVVLGGLINEEVQESVQKVPFLGDIPILGHLFK 596

Query: 516 NTTKLTQKTELVILLKPTVV 535
           +++   +K  L++ +KPT++
Sbjct: 597 SSSSGKKKKNLMVFIKPTII 616