Pairwise Alignments

Query, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

Subject, 563 a.a., pilus (MSHA type) biogenesis protein MshL (RefSeq) from Shewanella loihica PV-4

 Score =  526 bits (1355), Expect = e-154
 Identities = 279/573 (48%), Positives = 391/573 (68%), Gaps = 32/573 (5%)

Query: 3   KIVLASVVTSLVGCSMGHR-DPVEAKQALNQAINETNSRQIDQLPPSVEADLMPD----- 56
           K +   +V  L  C    R  PVE+K A++ +I    ++   Q+PP   A +MPD     
Sbjct: 5   KTITPLLVLMLAACQTTDRPQPVESKSAIDSSIAAAQNKP--QMPPP--AAVMPDSVQRE 60

Query: 57  ------MDTLTASEPKTLQRFRIQAEDVEAKAFFASLVQGTEYSAAIHPAVTGRITLNLT 110
                 + +LT S+P   +RF + A+DV+AK FF SLVQGT  S A+HP VTG ++L+L 
Sbjct: 61  LQSSALLGSLTPSQPSE-RRFDVSAKDVDAKVFFPSLVQGTPLSVAVHPNVTGTVSLSLK 119

Query: 111 DVTLDEALGVVRDLYGFEVVKEGKVIQVYPAGLRTVTIPVDYLQFKRTGRSLTSITTGTI 170
            VTL EAL VV D+YG+EV +EG++++V+PAG+RT T P++YL  +R G SLTS+ +G I
Sbjct: 120 GVTLSEALQVVEDIYGYEVSREGRILRVFPAGMRTETFPLNYLYMERQGLSLTSVNSGRI 179

Query: 171 T---NTDTNNSNSSSSSSSSISSNSSSDGSSSNSNSNRSDARGGTEIETTNESDFWPLLE 227
           +   N   NN N+ ++S++  ++NS+++G  SNSN N ++   GT I +  ++DFW  L+
Sbjct: 180 SDNNNNRNNNGNNGNNSNNYNNNNSNNNGGDSNSN-NSNETTNGTFIRSKTKTDFWGELK 238

Query: 228 KAVAQLLGGSG-GQTVIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHRQVILEAKILE 286
           + +  ++G +G G+ V+V+PQAG++T+RAYP+E+RQV  FL  ++  + RQVILEAK+LE
Sbjct: 239 ETLESIIGNTGDGRQVVVSPQAGLVTIRAYPNELRQVKTFLKTAESHLQRQVILEAKVLE 298

Query: 287 VTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPGLDAIGNLLGGQSNV 346
           VTLSDGYQQGI+W      +G N      S   D  G+ ITS +          GG +++
Sbjct: 299 VTLSDGYQQGIHWESVLGQSGNNSIEFGTSPAPDGLGDVITSAI----------GGITSL 348

Query: 347 VISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGDNA 406
            I    F  +I+ + TQGD++VLSSPRVTASNNQKAVIKVG DEY+VTD+SS    G   
Sbjct: 349 QIKGKDFSTMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGRDEYFVTDVSSTTVAGTTP 408

Query: 407 QASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLAR 466
             +P++ LTPFFSGI+LDVTPQID++G+VLLH+HP+VI++++Q K I      +ELPLA+
Sbjct: 409 VTTPEVELTPFFSGIALDVTPQIDEEGSVLLHIHPSVIDIKEQNKSIKVSDSTLELPLAQ 468

Query: 467 SSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTEL 526
           S IRESD+VI+A  GDVVVIGGLMKS  ++ +SKVP LGD+P LG  F N +   +KTEL
Sbjct: 469 SEIRESDTVIKANTGDVVVIGGLMKSENIELISKVPLLGDIPFLGEAFTNRSNSLRKTEL 528

Query: 527 VILLKPTVVGVNTWQKELERSRSLLQEWFPDSQ 559
           VILLKPTVVG  TWQ EL+RS++LL  W+P+ +
Sbjct: 529 VILLKPTVVGAETWQTELQRSKALLDRWYPEEK 561